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BioLiP
>protein
ADDIVLKAKNGDVKFPHKAHQKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGCHEEDKKGPTKCGECHKK

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4haj:A 71 71 0.9718 0.9718 0.9718 7.16e-43 4hb6:A, 4hb8:A, 4hbf:A, 4hc3:A, 4hdl:A, 2ldo:A, 2lzz:A, 2mz9:A, 2n91:A, 1os6:A, 3sel:X, 3sj0:X, 3sj1:X, 3sj4:X
2 3bxu:A 71 71 0.7606 0.7606 0.7606 8.00e-33 3bxu:B
3 3h33:A 72 69 0.6197 0.6111 0.6377 2.55e-26
4 3h34:A 70 69 0.5634 0.5714 0.5797 2.99e-21
5 3h4n:B 69 68 0.5775 0.5942 0.6029 1.09e-18 3h4n:A
6 1ehj:A 68 71 0.4648 0.4853 0.4648 4.57e-11 1f22:A, 1hh5:A, 1kwj:A, 1l3o:A, 1lm2:A, 1new:A
7 3cao:A 103 30 0.2254 0.1553 0.5333 5.17e-04 3car:A
8 2bq4:B 115 93 0.4366 0.2696 0.3333 0.002 2bq4:A
9 4lmh:D 695 65 0.2958 0.0302 0.3231 0.032 4lmh:A, 4lmh:B, 4lmh:C
10 2e84:A 513 80 0.3380 0.0468 0.3000 0.16
11 2e84:A 513 74 0.2817 0.0390 0.2703 5.2
12 1aqe:A 110 90 0.3662 0.2364 0.2889 0.26 1czj:A
13 19hc:A 292 83 0.3521 0.0856 0.3012 0.46 19hc:B, 1ofw:A, 1ofw:B, 1ofy:A, 1ofy:B
14 1gws:A 503 81 0.3239 0.0457 0.2840 0.62 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
15 1gws:A 503 52 0.2535 0.0358 0.3462 7.4 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
16 1zzh:B 308 34 0.1408 0.0325 0.2941 0.67 1zzh:A, 1zzh:C, 1zzh:D
17 4fvk:A 367 17 0.1408 0.0272 0.5882 0.81 4fvk:B, 4gdi:A, 4gdi:B, 4gdi:C, 4gdi:D, 4gdi:E, 4gdi:F, 4gdj:A, 4gez:A, 4gez:B, 4gez:C, 4gez:D, 4gez:E, 4gez:F, 4gez:G, 4gez:H, 4gez:I, 4gez:J, 4gez:K, 4gez:L
18 4gdj:B 321 17 0.1408 0.0312 0.5882 1.1 4gdj:C, 4gdj:D
19 5mog:B 472 29 0.1690 0.0254 0.4138 1.7 5mog:A, 5mog:C, 5mog:D, 5mog:E
20 3ov0:A 318 66 0.3099 0.0692 0.3333 2.0 3oue:A, 3ouq:A, 1rwj:A
21 2c1v:A 335 34 0.1268 0.0269 0.2647 3.0 2c1u:A, 2c1u:B, 2c1u:C, 2c1u:D, 2c1v:B
22 1duw:A 289 81 0.2958 0.0727 0.2593 3.7
23 7zpf:A 464 18 0.1268 0.0194 0.5000 4.8 7zpf:B, 7zpf:C, 7zpf:D
24 1z1n:X 516 82 0.3239 0.0446 0.2805 5.0
25 1z1n:X 516 77 0.3380 0.0465 0.3117 8.3
26 8hku:L40E 55 35 0.1408 0.1818 0.2857 6.1 8hkv:L40E, 8hky:L40E, 8hkz:L40E, 8hl1:L40E, 8hl2:L40E, 8hl3:L40E, 8hl4:L40E, 8hl5:L40E
27 8hmf:A 533 25 0.0986 0.0131 0.2800 6.3 8hme:A
28 8bek:C 737 24 0.1268 0.0122 0.3750 7.5 7as0:A, 7as1:A, 7as2:A, 7as3:A, 5buh:A, 4cb4:A, 4cb5:A, 4cb6:A, 4cb6:B, 4cb7:B, 5eg7:A, 4eqk:A, 4es5:A, 4es5:B, 4es5:C, 4es5:D, 6euv:A, 6euv:I, 6euv:C, 6euv:F, 6euw:A, 6euy:A, 6euy:B, 6euy:C, 5f79:A, 5fmm:A, 5fmq:A, 8h69:C, 5jun:A, 5jur:A, 4nce:A, 4ncm:A, 7nha:C, 7nhc:C, 7nhx:C, 7ni0:C, 7nik:C, 7nil:C, 7nir:C, 7nis:C, 7nj3:C, 7nj4:C, 7nj5:C, 7nj7:C, 7nk1:C, 7nk2:C, 7nk4:C, 7nk6:C, 7nk8:C, 7nka:C, 7nkc:C, 7nki:C, 7nkr:C, 4p1u:A, 8pm0:C, 8pnp:C, 8pnq:C, 7qtl:C, 7r0e:C, 8r3k:C, 8r3l:C, 8r60:C, 8r65:C, 6rr7:C, 6s5v:AAAA, 6s5v:ABAA, 2vqz:A, 2vqz:B, 2vqz:D, 2vqz:E, 2vqz:F, 3wi1:A, 5wl0:A, 7xme:A, 7xme:B, 7xme:C, 7xme:D, 4yd0:A
29 2ayj:A 56 35 0.1408 0.1786 0.2857 7.7
30 6mif:A 79 30 0.1972 0.1772 0.4667 8.3
31 3kyd:B 477 13 0.1268 0.0189 0.6923 8.7
32 6cwy:D 487 13 0.1268 0.0185 0.6923 8.7
33 1zlp:B 285 37 0.1831 0.0456 0.3514 9.6 1zlp:A
34 3umv:A 472 33 0.1268 0.0191 0.2727 9.6 3umv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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