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BioLiP
>protein
ADDIVLKAKNGDAKFPHKAHQKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGCHEEMKKGPTKCGECHKK

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4haj:A 71 71 0.9718 0.9718 0.9718 1.49e-43 4hb6:A, 4hb8:A, 4hbf:A, 4hc3:A, 4hdl:A, 2ldo:A, 2lzz:A, 2mz9:A, 2n91:A, 1os6:A, 3sel:X, 3sj0:X, 3sj1:X, 3sj4:X
2 3bxu:A 71 71 0.7606 0.7606 0.7606 1.88e-33 3bxu:B
3 3h33:A 72 69 0.6197 0.6111 0.6377 4.17e-27
4 3h34:A 70 69 0.5493 0.5571 0.5652 1.04e-20
5 3h4n:B 69 68 0.5775 0.5942 0.6029 2.91e-19 3h4n:A
6 1ehj:A 68 71 0.4507 0.4706 0.4507 3.45e-10 1f22:A, 1hh5:A, 1kwj:A, 1l3o:A, 1lm2:A, 1new:A
7 2bq4:B 115 111 0.4930 0.3043 0.3153 3.12e-04 2bq4:A
8 3cao:A 103 30 0.2254 0.1553 0.5333 4.37e-04 3car:A
9 2e84:A 513 80 0.3521 0.0487 0.3125 0.010
10 4lmh:D 695 55 0.2535 0.0259 0.3273 0.092 4lmh:A, 4lmh:B, 4lmh:C
11 1aqe:A 110 90 0.3521 0.2273 0.2778 0.13 1czj:A
12 1zzh:B 308 34 0.1408 0.0325 0.2941 0.73 1zzh:A, 1zzh:C, 1zzh:D
13 4fvk:A 367 17 0.1408 0.0272 0.5882 0.83 4fvk:B, 4gdi:A, 4gdi:B, 4gdi:C, 4gdi:D, 4gdi:E, 4gdi:F, 4gdj:A, 4gez:A, 4gez:B, 4gez:C, 4gez:D, 4gez:E, 4gez:F, 4gez:G, 4gez:H, 4gez:I, 4gez:J, 4gez:K, 4gez:L
14 1z1n:X 516 56 0.2817 0.0388 0.3571 0.99
15 1z1n:X 516 77 0.3521 0.0484 0.3247 2.8
16 4gdj:B 321 17 0.1408 0.0312 0.5882 1.1 4gdj:C, 4gdj:D
17 1gws:A 503 52 0.2676 0.0378 0.3654 1.4 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
18 1gws:A 503 72 0.2958 0.0417 0.2917 2.1 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
19 3ov0:A 318 65 0.2817 0.0629 0.3077 1.6 3oue:A, 3ouq:A, 1rwj:A
20 1duw:A 289 83 0.3099 0.0761 0.2651 2.1
21 1duw:A 289 51 0.2535 0.0623 0.3529 2.2
22 2cy3:A 118 31 0.1972 0.1186 0.4516 3.1 1w7o:A
23 2c1v:A 335 34 0.1268 0.0269 0.2647 3.3 2c1u:A, 2c1u:B, 2c1u:C, 2c1u:D, 2c1v:B
24 8gy2:B 433 35 0.1690 0.0277 0.3429 3.8
25 19hc:A 292 81 0.3380 0.0822 0.2963 4.4 19hc:B, 1ofw:A, 1ofw:B, 1ofy:A, 1ofy:B
26 3mq2:A 215 21 0.1268 0.0419 0.4286 5.5 3mq2:B
27 6cwy:D 487 14 0.1268 0.0185 0.6429 5.5
28 5mog:B 472 20 0.1268 0.0191 0.4500 5.6 5mog:A, 5mog:C, 5mog:D, 5mog:E
29 3kyd:B 477 14 0.1268 0.0189 0.6429 5.6
30 8hmf:A 533 25 0.0986 0.0131 0.2800 6.1 8hme:A
31 8xmd:B 1061 32 0.1549 0.0104 0.3438 6.6 7eu0:B, 8hyj:B, 8xme:B
32 4qo5:A 521 26 0.1268 0.0173 0.3462 6.9
33 3kyc:B 548 14 0.1268 0.0164 0.6429 7.2 6cwz:D, 6xog:B, 6xoh:B, 1y8q:B, 1y8q:D, 1y8r:B, 1y8r:E
34 8xmc:B 1082 32 0.1549 0.0102 0.3438 7.6 7eu1:B, 8xmb:B
35 2ccy:A 127 15 0.1408 0.0787 0.6667 7.7 2ccy:B
36 4rul:A 823 51 0.1972 0.0170 0.2745 8.3 1cy1:A, 1cy2:A, 1cy4:A, 1cy6:A, 1cy7:A, 1cy8:A, 1mw8:X, 3px7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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