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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADAQRSHYTVYPSLPHIPFVKLLSGKESEVNVEKRWELYHQLHSHFHDQVDHIIDNIEADLKAEISDLLYSRCFNTIFLL
GSDSTTKIELKDESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEENDVSYDLSLVENFKRLFGKDLAMVFNFKDV
DSINFNTLDNFIILLKSAFKYDHVKISLIFNINTNLSNIEKNLRQSTIRLLKRNYHKLDVSSNKGFKYGNQIFQSFLDTV
DGKLNLSDRFVEFILSKMANNTNHNLQLLTKMLDYSLMSYFFQNAFSVFIDPVNVDFLNDDYLKILSRCPTFMFFVEGLI
KQNRGLEEFFVEFLVRENPINGHAKFVARFLEEELNITNFNLIELYHNLLIGKLDSYLDRWSACKEYKDRLHFEPIDTIF
QELFTLDNRSGLLTQSIFPSYKSNIEDNLLSWEQVLPSLSGDLDKIMAPVLGQLFKLYREANMTINIYDFYIAFRETLPK
EEILNFIRKDPSNTKLLELAETPDAFDKVALILFMQAIFAFENMGLIKFQSTKSYDLVEKCVWRGI

The query sequence (length=546) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7tjf:C 554 555 0.9927 0.9783 0.9766 0.0 7tjh:C, 7tji:C, 7tjj:C, 7tjk:C
2 7mca:C 584 583 1.0000 0.9349 0.9365 0.0 6rqc:C, 6wgi:C, 5zr1:C
3 5oey:D 301 40 0.0311 0.0565 0.4250 1.00
4 4zs9:B 378 94 0.0440 0.0635 0.2553 1.6 4zs9:A, 4zza:A, 4zza:B, 4zze:A, 4zze:B
5 7y8t:A 1298 40 0.0293 0.0123 0.4000 2.4 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
6 3kv4:A 432 54 0.0293 0.0370 0.2963 5.0 4do0:A, 3k3n:A, 3k3o:A, 2wwu:A
7 7jgs:C 614 32 0.0220 0.0195 0.3750 5.1 7jgr:C, 7jk2:C, 7jk3:C, 7jk4:C, 7jk5:C, 7jk6:C
8 4xgc:C 567 32 0.0220 0.0212 0.3750 5.1
9 9c9y:A 612 66 0.0293 0.0261 0.2424 7.3 9ca0:A, 9ca1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218