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BioLiP
>protein
ADALHIRFPDGAVIEYEPETSALTVSGIKTASVTASGSVTATVPVVMVKASTRVTLDTPEVVCTNRLITGTLEVQKGGTM
RGNIEHTGGELSSNGKVLHTHKHPGDSGGTTGSPL

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3aqj:A 117 115 1.0000 0.9829 1.0000 2.32e-79 3aqj:B, 3aqj:C, 3aqj:P, 3aqj:Q, 3aqj:R, 3qr7:A, 3qr7:B
2 3vto:B 110 84 0.2696 0.2818 0.3690 3.83e-06 3vto:A, 3vto:C, 3vto:P, 3vto:Q, 3vto:R
3 7q4v:B 599 41 0.1478 0.0284 0.4146 1.4 8a5e:B, 7q4v:F, 7q4w:B, 7q4w:F
4 5n6n:C 698 33 0.1043 0.0172 0.3636 4.9 5m4a:A
5 5cxw:A 376 106 0.2522 0.0771 0.2736 6.0
6 3h8t:A 182 29 0.1043 0.0659 0.4138 6.7 3h8t:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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