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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAYVVTNGQGAMPAFGGRLSDADIANV
AAYIADQAENNKW

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3dr0:A 93 93 0.9892 0.9892 0.9892 3.25e-62 3dr0:B, 3dr0:C, 4eic:A, 4eid:A
2 3dmi:A 87 88 0.5484 0.5862 0.5795 5.80e-30
3 2zbo:A 86 89 0.5161 0.5581 0.5393 3.18e-28 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
4 1c6o:A 89 93 0.5376 0.5618 0.5376 5.65e-28 1c6o:B, 1c6r:A
5 1ls9:A 91 90 0.5269 0.5385 0.5444 1.97e-27
6 1kib:A 89 88 0.5376 0.5618 0.5682 2.01e-27 1f1f:A, 1kib:B, 1kib:C, 1kib:D, 1kib:E, 1kib:F, 1kib:G, 1kib:H
7 1gdv:A 85 89 0.5161 0.5647 0.5393 2.19e-27
8 1a2s:A 89 93 0.5269 0.5506 0.5269 1.82e-26 1ced:A, 1ctj:A
9 7y5e:GN 84 87 0.5054 0.5595 0.5402 2.71e-26 7y5e:G2, 7y7a:G7, 7y7a:Go
10 1cyj:A 90 93 0.5376 0.5556 0.5376 5.17e-26 1cyi:A
11 3ph2:B 85 89 0.5484 0.6000 0.5730 1.93e-25 2v08:A, 2v08:B
12 1c6s:A 87 88 0.5161 0.5517 0.5455 5.12e-25 6tr1:A, 6tr1:C, 6tr1:E, 6tsy:A, 6tsy:B, 6tsy:C, 6tsy:D, 6tsy:E, 6tsy:F
13 4gyd:A 86 89 0.4731 0.5116 0.4944 3.80e-20 4gyd:B, 4gyd:C, 4gyd:D, 4gyd:E, 4gyd:F, 4h0j:A, 4h0j:B, 4h0j:C, 4h0j:D, 4h0j:E, 4h0j:F, 4h0k:A, 4h0k:B
14 4eie:A 82 86 0.3763 0.4268 0.4070 5.13e-15 4eif:A
15 4kmg:A 88 88 0.3226 0.3409 0.3409 8.04e-10
16 3dp5:A 99 82 0.3118 0.2929 0.3537 6.06e-09 3cu4:A, 5mcs:A, 6u97:A
17 2dge:A 102 101 0.3226 0.2941 0.2970 1.18e-07 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
18 7o38:A 81 76 0.2688 0.3086 0.3289 9.13e-07
19 7o9u:A 153 96 0.2688 0.1634 0.2604 4.89e-05
20 8snh:G 304 92 0.2903 0.0888 0.2935 9.54e-05
21 8snh:G 304 82 0.1935 0.0592 0.2195 2.9
22 2zoo:A 438 89 0.3118 0.0662 0.3258 6.33e-04
23 8gy3:A 440 83 0.2903 0.0614 0.3253 7.05e-04
24 8yts:A 83 91 0.3011 0.3373 0.3077 8.19e-04 8yts:B
25 8uf3:A 187 93 0.3548 0.1765 0.3548 8.83e-04 8uf3:B
26 8smr:G 312 86 0.3118 0.0929 0.3372 0.001
27 8smr:G 312 88 0.2473 0.0737 0.2614 0.005
28 4j20:A 88 90 0.3333 0.3523 0.3444 0.002 4j20:B
29 8gy2:B 433 101 0.3548 0.0762 0.3267 0.004
30 5djq:C 303 84 0.3118 0.0957 0.3452 0.007 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
31 5djq:C 303 80 0.2366 0.0726 0.2750 1.4 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
32 6f0k:E 182 92 0.2473 0.1264 0.2500 0.012
33 8smr:K 181 78 0.2688 0.1381 0.3205 0.012 6q2u:A, 8smr:N, 8snh:K, 8snh:N
34 4lji:A 133 37 0.1398 0.0977 0.3514 0.013 4lji:B
35 3ty3:A 358 66 0.2043 0.0531 0.2879 0.017 3ty3:B
36 2l4d:A 106 96 0.2473 0.2170 0.2396 0.037
37 2zzs:A 81 74 0.2688 0.3086 0.3378 0.040 2zzs:B, 2zzs:C, 2zzs:D, 2zzs:E, 2zzs:F, 2zzs:G, 2zzs:H, 2zzs:I, 2zzs:J, 2zzs:K, 2zzs:L, 2zzs:M, 2zzs:N, 2zzs:O, 2zzs:P, 2zzs:Q, 2zzs:R, 2zzs:S, 2zzs:T, 2zzs:U, 2zzs:V, 2zzs:W, 2zzs:X, 2zzs:Y, 2zzs:Z, 2zzs:1, 2zzs:2, 2zzs:3, 2zzs:4, 2zzs:5, 2zzs:6
38 8xr6:V 137 31 0.1290 0.0876 0.3871 0.058 8wb4:V, 8wb4:v, 8xr6:v
39 6jlu:V 137 31 0.1398 0.0949 0.4194 0.063 8iwh:V, 8iwh:v, 6j3y:V, 6j3y:v, 6j3z:V, 6j3z:v, 6j40:V, 6j40:v, 8j5k:V, 8j5k:v, 6jlu:v, 7vd5:V, 7vd5:v
40 8wql:VD 135 31 0.1613 0.1111 0.4839 0.066 1f1c:A, 1f1c:B, 8wql:VE, 8wql:V1, 8wql:v1, 8wql:vD, 8wql:vE
41 4yuu:V1 129 105 0.2903 0.2093 0.2571 0.069 4yuu:v1, 4yuu:V2, 4yuu:v2
42 3a0b:V 137 31 0.1183 0.0803 0.3548 0.069 3a0b:v, 3a0h:V, 3a0h:v, 2axt:V, 2axt:v, 5b5e:V, 5b5e:v, 5b66:V, 5b66:v, 7cji:V, 7cji:v, 7cjj:V, 7cjj:v, 7cou:V, 7cou:v, 7d1t:V, 7d1t:v, 7d1u:V, 7d1u:v, 6dhe:V, 6dhe:v, 6dhf:V, 6dhf:v, 6dhg:V, 6dhg:v, 6dhh:V, 6dhh:v, 6dho:V, 6dho:v, 6dhp:V, 6dhp:v, 5e79:V, 5e79:v, 5e7c:V, 5e7c:v, 7eda:V, 9evx:V, 9evx:v, 8ez5:V, 8ez5:v, 8f4c:V, 8f4c:v, 8f4d:V, 8f4d:v, 8f4e:V, 8f4e:v, 8f4f:V, 8f4f:v, 8f4g:V, 8f4g:v, 8f4h:V, 8f4h:v, 8f4i:V, 8f4i:v, 8f4j:V, 8f4j:v, 8f4k:V, 8f4k:v, 4fby:V, 4fby:i, 8gn0:V, 8gn0:v, 8gn1:V, 8gn1:v, 8gn2:V, 8gn2:v, 5gth:V, 5gth:v, 5gti:V, 5gti:v, 5h2f:V, 5h2f:v, 4il6:V, 4il6:v, 8ir5:V, 8ir5:v, 8ir6:V, 8ir6:v, 8ir7:V, 8ir7:v, 8ir8:V, 8ir8:v, 8ir9:V, 8ir9:v, 8ira:V, 8ira:v, 8irb:V, 8irb:v, 8irc:V, 8irc:v, 8ird:V, 8ird:v, 8ire:V, 8ire:v, 8irf:V, 8irf:v, 8irg:V, 8irg:v, 8irh:V, 8irh:v, 8iri:V, 8iri:v, 4ixq:V, 4ixq:v, 4ixr:V, 4ixr:v, 1izl:V, 1izl:0, 6jlj:V, 6jlj:v, 6jlk:V, 6jlk:v, 6jll:V, 6jll:v, 6jlm:V, 6jlm:v, 6jln:V, 6jln:v, 6jlo:V, 6jlo:v, 6jlp:V, 6jlp:v, 5kaf:V, 5kaf:v, 5kai:V, 5kai:v, 3kzi:V, 5mx2:V, 5mx2:v, 1mz4:A, 4pbu:V, 4pbu:v, 4pj0:V, 4pj0:v, 7rf1:V, 7rf1:v, 7rf2:V, 7rf2:v, 7rf3:V, 7rf3:v, 7rf4:V, 7rf4:v, 7rf5:V, 7rf5:v, 7rf6:V, 7rf6:v, 7rf7:V, 7rf7:v, 7rf8:V, 7rf8:v, 4rvy:V, 4rvy:v, 1s5l:V, 1s5l:v, 5tis:V, 5tis:v, 4tnh:V, 4tnh:v, 4tni:V, 4tni:v, 4tnj:V, 4tnj:v, 4tnk:V, 4tnk:v, 4ub6:V, 4ub6:v, 4ub8:V, 4ub8:v, 5v2c:V, 5v2c:v, 4v62:AV, 4v62:BV, 4v82:AV, 4v82:BV, 6w1o:V, 6w1o:v, 6w1p:V, 6w1p:v, 6w1q:V, 6w1q:v, 6w1r:V, 6w1r:v, 6w1t:V, 6w1t:v, 6w1u:V, 6w1u:v, 6w1v:V, 6w1v:v, 1w5c:T, 1w5c:V, 5ws5:V, 5ws5:v, 5ws6:V, 5ws6:v, 3wu2:V, 3wu2:v, 7yq2:V, 7yq2:v, 7yq7:V, 7yq7:v, 5zzn:V, 5zzn:v
43 1b7v:A 71 79 0.2473 0.3239 0.2911 0.074 1c75:A, 1k3g:A, 1k3h:A, 1n9c:A
44 7y5e:VL 134 105 0.3011 0.2090 0.2667 0.075 7y5e:V6, 7y5e:v6, 7y5e:vL, 7y7a:V9, 7y7a:v9, 7y7a:VE, 7y7a:vE, 7y7a:VO, 7y7a:vO, 7y7a:VZ, 7y7a:vZ, 7y7a:Vm, 7y7a:vm
45 1kb0:A 670 98 0.3118 0.0433 0.2959 0.077
46 2zon:G 81 87 0.3118 0.3580 0.3333 0.077
47 1gks:A 78 74 0.2366 0.2821 0.2973 0.10
48 4ax3:D 457 93 0.2796 0.0569 0.2796 0.17 4ax3:A, 4ax3:B, 4ax3:C, 6f1q:A, 6fja:A, 5obo:A, 5ocb:A, 5ocf:A, 8qgf:A, 6qpt:A, 6qpt:B, 6qpt:C, 6qpt:D, 6qpt:E, 6qpt:F, 6qpu:A, 6qpu:B, 6qpu:C, 6qpu:D, 6qpu:E, 6qpu:F, 6qpv:A, 6qpv:I, 6qpx:A, 6qpx:I, 6qpz:A, 6qpz:I, 6qq0:A, 6qq1:A, 6qq2:A, 7qq2:A, 7r2u:A, 2yqb:A, 3zbm:A, 3ziy:A
49 2aiu:A 104 29 0.1290 0.1154 0.4138 0.17
50 1cno:G 87 51 0.2366 0.2529 0.4314 0.18 1cno:A, 1cno:B, 1cno:C, 1cno:D, 1cno:E, 1cno:F, 1cno:H
51 4pwa:D 87 87 0.3333 0.3563 0.3563 0.18 4pw9:B, 4pwa:A, 4pwa:B, 4pwa:C
52 3m97:X 118 105 0.3548 0.2797 0.3143 0.18 1c7m:A, 1i6d:A, 1i6e:A, 1ql3:A, 1ql3:B, 1ql3:C, 1ql3:D, 1ql4:A, 1ql4:B, 1ql4:C, 1ql4:D
53 6xkw:p 254 18 0.1290 0.0472 0.6667 0.19 6xkx:p, 6xkz:p
54 6xkw:p 254 48 0.1828 0.0669 0.3542 4.6 6xkx:p, 6xkz:p
55 2iv0:A 412 42 0.1505 0.0340 0.3333 0.32 2iv0:B
56 8hn3:A 80 83 0.2688 0.3125 0.3012 0.33 8hn3:B
57 4o1w:A 79 88 0.3118 0.3671 0.3295 0.36 4o1w:D, 4o1w:B, 4o1w:C, 4o1w:E, 4o1w:F
58 6adq:C 223 90 0.2688 0.1121 0.2778 0.37 6adq:O, 6hwh:M, 6hwh:K, 8ovc:O, 8ovc:C, 8ovd:O, 8ovd:C, 7rh5:O, 7rh5:I, 7rh6:O, 7rh6:I, 7rh7:O, 7rh7:I
59 6adq:C 223 69 0.2366 0.0987 0.3188 9.3 6adq:O, 6hwh:M, 6hwh:K, 8ovc:O, 8ovc:C, 8ovd:O, 8ovd:C, 7rh5:O, 7rh5:I, 7rh6:O, 7rh6:I, 7rh7:O, 7rh7:I
60 6hwh:i 162 90 0.2688 0.1543 0.2778 0.41 6hwh:j
61 6hwh:i 162 69 0.2366 0.1358 0.3188 8.0 6hwh:j
62 1qn2:A 99 27 0.1613 0.1515 0.5556 0.47 1qn2:B, 1qn2:C
63 1cyc:A 103 29 0.1290 0.1165 0.4138 0.51 1cyc:B, 3cyt:O, 3cyt:I, 5cyt:R, 1i54:A, 1i54:B, 1i55:A, 1i55:B, 1lfm:A, 1lfm:B
64 1c53:A 79 78 0.2796 0.3291 0.3333 0.54
65 2yev:B 319 14 0.1075 0.0313 0.7143 0.57 2yev:E
66 7qhm:C 233 18 0.1075 0.0429 0.5556 0.78 7q21:C, 7q21:c, 7qhm:P, 7qho:C, 7qho:P
67 7wfe:B1 172 57 0.1935 0.1047 0.3158 0.97 8j7a:1, 7wg5:B1
68 7wfd:A1 196 57 0.1935 0.0918 0.3158 1.0 8j6z:1, 8j7b:1, 5l8r:1, 3lw5:1, 2o01:1, 4rku:1, 7wg5:A1, 2wsc:1, 2wse:1, 2wsf:1, 4xk8:1, 4xk8:6, 4y28:1, 6yac:1, 6yez:1, 6zoo:1, 6zxs:1
69 1akk:A 104 97 0.2473 0.2212 0.2371 1.0 2b4z:A, 5c0z:A, 5c0z:D, 5c0z:B, 5c0z:C, 5c9m:A, 5c9m:D, 5c9m:B, 5c9m:C, 1crc:A, 1crc:B, 5df5:A, 5df5:B, 5df5:C, 5df5:D, 8dvx:A, 8dvx:D, 8dvx:B, 8dvx:C, 8dzl:A, 8dzl:B, 8dzl:C, 8dzl:D, 6ff5:A, 1fi7:A, 1fi9:A, 2frc:A, 1giw:A, 2giw:A, 1hrc:A, 1i5t:A, 5iy5:1, 5iy5:2, 3j2t:H, 3j2t:I, 3j2t:J, 3j2t:K, 3j2t:L, 3j2t:M, 3j2t:N, 3jbt:B, 3jbt:D, 3jbt:F, 3jbt:H, 3jbt:J, 3jbt:L, 3jbt:N, 5juy:H, 5juy:I, 5juy:J, 5juy:K, 5juy:L, 5juy:M, 5juy:N, 6k9i:A, 6k9j:A, 1lc1:A, 1lc2:A, 7ljx:A, 7ljx:B, 1m60:A, 6n1o:A, 6n1o:B, 6n1o:C, 6n1o:D, 2n3b:A, 3nbs:A, 3nbs:B, 3nbs:C, 3nbs:D, 3nbt:A, 3nbt:E, 3nbt:B, 3nbt:C, 3nbt:D, 3nbt:F, 4nfg:B, 3o1y:A, 3o1y:B, 3o1y:C, 3o20:A, 3o20:B, 3o20:C, 1ocd:A, 2pcb:B, 4rsz:A, 4rsz:B, 4rsz:C, 4rsz:D, 4rsz:E, 4rsz:F, 6suv:AaA, 6suv:BaB, 6suv:CaC, 6suv:DaD, 6suv:EaE, 6suv:FaF, 6suv:GaG, 6suv:HaH, 1u75:B, 3wc8:A, 1wej:F, 3wui:A, 5wve:B, 5wve:D, 5wve:F, 5wve:H, 5wve:J, 5wve:L, 5wve:N, 2ybb:Y, 5zkv:A
70 8eqm:V 131 52 0.1935 0.1374 0.3462 1.1 8eqm:v
71 7yca:4 203 56 0.2151 0.0985 0.3571 1.1
72 5lo9:A 471 85 0.2473 0.0488 0.2706 1.2 5lo9:B
73 2xts:D 204 17 0.1075 0.0490 0.5882 1.4 2xts:B
74 8ed4:I 105 105 0.3226 0.2857 0.2857 2.0 8ed4:J, 8ed4:K, 8ed4:L
75 4xkm:A 435 40 0.1505 0.0322 0.3500 2.0 4xkm:B, 4xkm:C, 4xkm:D, 4xkm:E, 4xkm:F, 4xkm:G, 4xkm:H
76 2yk3:A 110 97 0.2796 0.2364 0.2680 2.0 2yk3:B, 2yk3:C
77 7w2j:C 418 94 0.2903 0.0646 0.2872 2.2 8jej:C, 8jek:C, 8k6j:C, 8k6k:C, 7w2j:F, 7wsq:C, 7wsq:F, 8xcm:C, 8xcn:C
78 1etp:A 190 94 0.3226 0.1579 0.3191 2.3 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
79 7s7j:A 84 39 0.1505 0.1667 0.3590 3.2
80 1fcd:C 174 81 0.2366 0.1264 0.2716 3.7 1fcd:D
81 8b6j:D 295 14 0.0968 0.0305 0.6429 5.1 8b6j:d, 8bqs:D, 8bqs:d, 8gym:qD, 8gym:qd, 8gym:Qd, 8gym:QD, 8gzu:qD, 8gzu:qd, 8gzu:QD, 8gzu:Qd, 7tgh:3D, 7tgh:3d
82 6kls:C 236 17 0.0753 0.0297 0.4118 6.3 6kls:F, 6klv:C, 6klv:F
83 7arc:G 682 43 0.1505 0.0205 0.3256 6.9 7ard:G
84 7e1w:O 223 85 0.2581 0.1076 0.2824 7.0 7e1v:O, 7e1v:C, 7e1w:C, 7e1x:O, 7e1x:C, 8hcr:C, 8hcr:O
85 7qco:L 150 48 0.1505 0.0933 0.2917 7.2 7qco:S, 7qco:s, 7qco:l
86 8hdd:B 121 91 0.2473 0.1901 0.2527 7.3
87 7vzg:C 193 79 0.2473 0.1192 0.2911 7.8 7vzr:C
88 1ccr:A 111 18 0.0753 0.0631 0.3889 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218