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BioLiP
>protein
ACQAKRGDQRCDRECNSPGCGWDGGDCSLSVGDPWRQCEALQCWRLFNNSRCDPACSSPACLYDNFDCHAGGRERTCNPV
YEKYCADHFADGRCDQGCNTEECGWDGLDCASEVPALLARGVLVLTVLLPPEELLRSSADFLQRLSAILRTSLRFRLDAH
GQAMVFPYHIGSVVMLEIDNRLCLQSPENDHCFPDAQSAADYLGALSAVERLDFPYPLRDVRGEP

The query sequence (length=225) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zlp:A 241 231 1.0000 0.9336 0.9740 1.65e-163 5czv:A, 5czx:A, 5czx:B, 6xsw:C, 6xsw:F, 6xsw:J, 6xsw:X, 4zlp:B
2 7abv:A 232 228 0.5244 0.5086 0.5175 1.25e-83 3eto:A, 3eto:B, 3i08:A, 3i08:C, 3l95:X, 3l95:Y
3 2oo4:A 226 227 0.4978 0.4956 0.4934 1.43e-67 2oo4:B
4 2oo4:A 226 29 0.0711 0.0708 0.5517 7.26e-04 2oo4:B
5 1pb5:A 35 27 0.0667 0.4286 0.5556 6.69e-04
6 1pb5:A 35 27 0.0489 0.3143 0.4074 5.0
7 8hgg:C 1484 24 0.0622 0.0094 0.5833 0.26 8hgg:D, 8hgh:A, 8hgh:B
8 8hgg:C 1484 31 0.0578 0.0088 0.4194 5.9 8hgg:D, 8hgh:A, 8hgh:B
9 8a7e:C 1524 24 0.0622 0.0092 0.5833 0.27 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
10 8a7e:C 1524 31 0.0578 0.0085 0.4194 6.3 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
11 4lfl:B 172 33 0.0622 0.0814 0.4242 1.8 4lfl:D, 4lfm:B, 4lfm:D, 4lfn:B, 4lfn:D
12 8j4q:D 724 52 0.0889 0.0276 0.3846 2.0 8j4q:A, 8j4q:B, 8j4q:C, 8j4r:A, 8j4r:B, 8j4r:C, 8j4r:D, 6lfk:A, 6lfk:B, 6lfk:C, 6lfk:D
13 5zty:A 449 64 0.0800 0.0401 0.2812 2.7 6kpc:A
14 8oxm:A 2748 19 0.0400 0.0033 0.4737 2.9 8oxm:B
15 7sic:A 2773 19 0.0400 0.0032 0.4737 2.9 8oxo:A, 8oxo:B, 8oxp:A, 8oxp:B, 7sic:B, 7sid:A, 7sid:C
16 7ni5:A 2791 19 0.0400 0.0032 0.4737 2.9 7ni4:A, 7ni4:B, 7ni5:B, 7ni6:A, 7ni6:B, 8oxq:A, 8oxq:B
17 6pt0:R 298 64 0.0800 0.0604 0.2812 3.0 8guq:R, 8gur:R, 8gus:R, 8gut:R, 6kpf:R
18 5wqk:A 293 38 0.0667 0.0512 0.3947 6.8 5wqj:A, 5wqj:B, 5wqk:B
19 8fhj:C 532 73 0.0889 0.0376 0.2740 8.4 8fhj:A, 8fhj:B
20 8a7d:Q 273 31 0.0578 0.0476 0.4194 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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