Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ACPAERSGHVAVSDGRHMFVWGGYKSFYLPREELWIYNMETGRWKKINTEGDVPPSMSGSCAVCVDRVLYLFGGHHSRGN
TNKFYMLDSRVLQWERIDCQGIPPSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWHPRGWNDHVHILDTE
TFTWSQPITTGKAPSPRAAHACATVGNRGFVFGGRYRDARMNDLHYLNLDTWEWNELIPQGICPVGRSWHSLTPVSSDHL
FLFGGFTTDKQPLSDAWTYCISKNEWIQFNHPYTEKPRLWHTACASDEGEVIVFGGCANNLLVHHRAAHSNEILIFSV

The query sequence (length=318) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ebl:A 335 333 1.0000 0.9493 0.9550 0.0 6do3:A, 6do3:B, 6do4:B, 6do4:A, 6do5:B, 6do5:A, 8ebl:B, 8ebm:A, 8ebm:B, 8pif:A, 8pif:B, 8sge:A, 8sge:B, 8sgf:B, 8sgf:A, 8uxs:A, 8uxs:B
2 8bx8:C 3947 345 0.2830 0.0228 0.2609 4.48e-22 7k58:C, 7k5b:C, 7kek:C
3 8bx8:C 3947 254 0.2075 0.0167 0.2598 2.17e-16 7k58:C, 7k5b:C, 7kek:C
4 8bx8:C 3947 95 0.0912 0.0073 0.3053 1.38e-04 7k58:C, 7k5b:C, 7kek:C
5 2zwa:B 683 132 0.1164 0.0542 0.2803 1.52e-07 2zw9:A, 2zw9:B, 2zwa:A
6 6gy5:A 285 236 0.1635 0.1825 0.2203 0.011
7 2rpz:A 192 51 0.0472 0.0781 0.2941 1.7
8 5xwm:D 368 46 0.0346 0.0299 0.2391 2.5 5xwm:A, 5xwm:C, 5xwm:B
9 6s47:Bi 952 62 0.0503 0.0168 0.2581 2.6
10 6apl:C 306 51 0.0535 0.0556 0.3333 4.2 6apl:A, 6apl:B, 6apl:D, 6apl:E, 6apl:F
11 4uur:A 124 60 0.0535 0.1371 0.2833 7.4 4uur:B
12 6sg9:F4 541 25 0.0314 0.0185 0.4000 7.6 6sgb:F4
13 2g29:A 385 85 0.0660 0.0545 0.2471 8.3

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218