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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ACPAERSGHVAVSDGRHMFVWGGYKSFYLPREELWIYNMETGRWKKINTEGDVPPSMSGSCAVCVDRVLYLFGGHHSRGN
TNKFYMLDSRSRVLQWERIDCQGIPPSSKDKLGVWVYKNKLIFFGGYGYLPKVLGTFEFDETSFWSHPRGWNDHVHILDT
ETFTWSQPITTGKAPSPRAAHACATVGNRGFVFGGRYRDARMNDLHYLNLDTWEWNELIPQGICPVGRSWHSLTPVSSDH
LFLFGGFTTDKQPLSDAWTYCISKNEWIQFNHPYTEKPRLWHTACASDEGEVIVFGGCANNLLVHHRAAHSNEILIFSV

The query sequence (length=319) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ebl:A 335 333 1.0000 0.9522 0.9580 0.0 6do3:A, 6do3:B, 6do4:B, 6do4:A, 6do5:B, 6do5:A, 8ebl:B, 8ebm:A, 8ebm:B, 8pif:A, 8pif:B, 8sge:A, 8sge:B, 8sgf:B, 8sgf:A, 8uxs:A, 8uxs:B
2 8bx8:C 3947 339 0.2915 0.0236 0.2743 8.71e-22 7k58:C, 7k5b:C, 7kek:C
3 8bx8:C 3947 253 0.2132 0.0172 0.2688 4.48e-18 7k58:C, 7k5b:C, 7kek:C
4 8bx8:C 3947 95 0.0909 0.0073 0.3053 1.39e-04 7k58:C, 7k5b:C, 7kek:C
5 2zwa:B 683 132 0.1160 0.0542 0.2803 1.60e-07 2zw9:A, 2zw9:B, 2zwa:A
6 6gy5:A 285 237 0.1630 0.1825 0.2194 0.17
7 6apl:C 306 59 0.0596 0.0621 0.3220 2.5 6apl:A, 6apl:B, 6apl:D, 6apl:E, 6apl:F
8 5xwm:D 368 46 0.0345 0.0299 0.2391 2.6 5xwm:A, 5xwm:C, 5xwm:B
9 7pd1:B 367 102 0.0752 0.0654 0.2353 2.7 7pd1:A, 7pd2:A, 7pd2:B
10 6s47:Bi 952 62 0.0502 0.0168 0.2581 2.9
11 3c1o:A 314 58 0.0533 0.0541 0.2931 4.4
12 2rpz:A 192 53 0.0470 0.0781 0.2830 6.5
13 6sg9:F4 541 25 0.0313 0.0185 0.4000 7.4 6sgb:F4
14 4uur:A 124 60 0.0533 0.1371 0.2833 7.5 4uur:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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