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BioLiP
>protein
AAVIELGYMGISVKDPDAWKSFATDMLGLQVLDEGEKDRFYLRMDYWHHRIVVHHNGQDDLEYLGWRVAGKPEFEALGQK
LIDAGYKIRICDKVEAQERMVLGLMKTEDPGGNPTEIFWGPRIDMSNPFHPGRPLHGKFVTGDQGLGHCIVRQTDVAEAH
KFYSLLGFRGDVEYRIPTAELSFMHCNARDHSIAFGAMPAAKRLNHLMLEYTHMEDLGYTHQQFVKNEIDIALQLGIHAN
DKALTFYGATPSGWLIEPGWRGATAIDEAEYYVGDIFGHGVEATGYGLDVKLS

The query sequence (length=293) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ehz:A 299 298 1.0000 0.9799 0.9832 0.0 2ei0:A, 2ei1:A, 2ei2:A, 2ei3:A
2 2wl9:A 300 298 0.5768 0.5633 0.5671 1.27e-124 2wl3:A, 2wl3:B, 2wl3:C, 2wl3:D, 2wl9:B, 2wl9:C, 2wl9:D
3 1kmy:A 288 270 0.3413 0.3472 0.3704 6.34e-48 1han:A, 1knd:A, 1knf:A, 1lgt:A, 1lkd:A
4 1eil:A 289 278 0.3549 0.3599 0.3741 4.32e-47 1dhy:A, 1eiq:A, 1eir:A, 1kw3:B, 1kw6:B, 1kw8:B, 1kw9:B, 1kwc:B
5 6l3w:A 298 282 0.3174 0.3121 0.3298 8.65e-41
6 2zi8:A 299 280 0.3072 0.3010 0.3214 6.60e-39 2zi8:B, 2zyq:A, 2zyq:B
7 3vb0:A 289 298 0.2730 0.2768 0.2685 2.17e-20 3vb0:B, 3vb0:C, 3vb0:D
8 3b59:A 301 267 0.2218 0.2159 0.2434 1.03e-08 3b59:B, 3b59:C, 3b59:D, 3b59:E, 3b59:F
9 3hpv:A 297 269 0.2014 0.1987 0.2193 5.40e-06 3hpv:B, 3hpv:C, 3hpv:D, 3hpy:A, 3hpy:B, 3hpy:C, 3hpy:D, 3hq0:A, 3hq0:B, 3hq0:C, 3hq0:D
10 1f1u:A 322 122 0.1229 0.1118 0.2951 6.62e-06 1f1r:A, 1f1r:B, 1f1u:B, 1f1v:A, 1f1v:B
11 5znh:A 314 279 0.2082 0.1943 0.2186 2.23e-04 5zsx:A, 5zsz:A
12 1mpy:A 307 265 0.1843 0.1759 0.2038 0.029 1mpy:B, 1mpy:C, 1mpy:D
13 3mtw:A 403 92 0.0819 0.0596 0.2609 0.81
14 6czp:A 219 57 0.0512 0.0685 0.2632 1.1 6czp:B, 6czp:C, 6czp:D, 6czp:E, 6czp:F, 6czp:G, 6czp:H, 7uwt:A, 7uwt:B
15 1un9:A 537 65 0.0683 0.0372 0.3077 3.4 1un9:B
16 1h31:B 138 63 0.0648 0.1377 0.3016 4.1 1h31:D, 1h31:F, 1h31:H, 1h32:B, 1h33:B, 2oz1:B, 2oz1:D, 2oz1:F, 2oz1:H
17 4hjw:C 378 94 0.0819 0.0635 0.2553 5.3 4hjw:A, 4hjw:B
18 6a4z:A 127 27 0.0410 0.0945 0.4444 7.5 6a4z:B, 7w5e:A, 7w5e:B, 7w5e:C, 7w5e:D, 7wb2:A, 7wb2:B, 7wb2:C, 7wb2:D
19 2x0i:A 294 31 0.0375 0.0374 0.3548 8.9 2x0j:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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