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BioLiP
>protein
AATTPLEWSPTVGIIMVIANVIAITFGRQTIKYPSAEPALLATTAFGHILGVGLVLGLHN

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6tcl:K 60 60 1.0000 1.0000 1.0000 9.79e-38 6tcl:KK
2 6k61:k 78 74 1.0000 0.7692 0.8108 1.41e-33 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
3 6vpv:K 78 72 0.5333 0.4103 0.4444 3.09e-14 6vpv:k, 6vpv:9
4 6kif:K 78 69 0.5000 0.3846 0.4348 5.96e-14 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
5 8asp:k 77 69 0.5000 0.3896 0.4348 2.31e-11 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
6 4kt0:K 53 51 0.4667 0.5283 0.5490 3.82e-11
7 7s3d:K 75 66 0.4667 0.3733 0.4242 2.69e-10 7s3d:T, 7s3d:k
8 8wey:K 63 58 0.4333 0.4127 0.4483 6.57e-10
9 8wm6:K 69 57 0.4000 0.3478 0.4211 3.12e-09 8wmj:K, 8wmv:K, 8wmw:K
10 4l6v:K 80 74 0.5167 0.3875 0.4189 7.12e-09 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
11 7fix:K1 79 68 0.4500 0.3418 0.3971 9.35e-09 7fix:K2, 7fix:K3, 6tra:K, 6trc:K, 6trc:k, 6trc:9, 6trd:K, 6trd:k, 6trd:9
12 5zgb:K 59 46 0.3667 0.3729 0.4783 1.92e-07 7blz:K, 6fos:K, 5zgh:K
13 7y7b:K 78 65 0.4000 0.3077 0.3692 1.23e-06 7y8a:K
14 6kmx:aK 46 45 0.3333 0.4348 0.4444 1.59e-06 6kmx:bK, 6kmx:cK
15 7y5e:KN 70 58 0.4167 0.3571 0.4310 2.77e-06 7y5e:K2, 7y7a:K7, 7y7a:Ko
16 7m75:K 47 47 0.3333 0.4255 0.4255 4.56e-05 4fe1:K, 1jb0:K, 7m76:K, 7m78:K, 3pcq:K, 6pfy:K, 6pfy:T, 6pfy:g, 6pgk:T, 6pgk:K, 6pgk:g, 5zf0:K1, 5zf0:K2, 5zf0:K3, 5zf0:K4, 5zf0:K6, 5zf0:K5
17 7qco:K 65 58 0.2500 0.2308 0.2586 0.008 7qco:R, 7qco:r, 7qco:k
18 8bcv:K 88 20 0.2333 0.1591 0.7000 0.024 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
19 4y28:K 57 50 0.3500 0.3684 0.4200 0.033
20 7wfd:AK 65 55 0.3333 0.3077 0.3636 0.096 7wfe:BK, 7wg5:AK, 7wg5:BK
21 8j7a:K 56 47 0.3000 0.3214 0.3830 0.12
22 8j6z:K 84 20 0.2167 0.1548 0.6500 0.16 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
23 8htu:K 81 19 0.2000 0.1481 0.6316 0.22 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
24 8wgh:K 83 20 0.2167 0.1566 0.6500 0.24
25 7dr2:aK 69 27 0.2000 0.1739 0.4444 0.30 7dr0:K, 7dr2:cK
26 7a4p:K 86 32 0.2667 0.1860 0.5000 0.35 6zzx:K, 6zzy:K
27 6igz:K 80 20 0.1833 0.1375 0.5500 0.37
28 8cmo:K 89 19 0.2167 0.1461 0.6842 0.62
29 4xk8:k 46 18 0.2000 0.2609 0.6667 1.6 4xk8:K
30 6qex:A 1182 40 0.2500 0.0127 0.3750 1.7 7a65:A, 7a69:A, 7a6c:A, 7a6e:A, 7a6f:A, 6c0v:A, 7o9w:A
31 7dz7:K 86 31 0.2667 0.1860 0.5161 1.7 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
32 5da0:A 467 53 0.2500 0.0321 0.2830 3.0
33 6jo5:K 45 19 0.2167 0.2889 0.6842 3.2 8h2u:K, 6jo6:K
34 8wom:A 1217 46 0.2667 0.0131 0.3478 3.8 8woo:A, 8wp0:A
35 5guw:B 449 45 0.2000 0.0267 0.2667 5.5 5guw:D, 5gux:B, 3o0r:B, 3wfb:B, 3wfc:B, 3wfd:B, 3wfe:B
36 8wnt:B 463 34 0.2167 0.0281 0.3824 7.8 8qey:A, 8wny:B
37 7lx0:T 44 13 0.1500 0.2045 0.6923 8.5 7lx0:k, 7lx0:K, 6pnj:K, 6pnj:T, 6pnj:k
38 8ddx:D 992 26 0.1667 0.0101 0.3846 9.9
39 8ddr:A 968 26 0.1667 0.0103 0.3846 10.0 8ddq:A, 8ddq:B, 8ddq:C, 8ddq:D, 8ddr:B, 8ddr:C, 8ddr:D, 8dds:A, 8dds:B, 8dds:C, 8dds:D, 8ddt:A, 8ddt:B, 8ddt:C, 8ddt:D, 8ddu:A, 8ddu:B, 8ddu:C, 8ddu:D, 8ddv:A, 8ddv:B, 8ddv:C, 8ddv:D, 8ddx:A, 8ddx:B, 8ddx:C, 8ed7:A, 8ed7:B, 8ed7:C, 8ed7:D, 8ed8:A, 8ed8:B, 8ed8:C, 8ed8:D, 8ed9:A, 8ed9:B, 8ed9:C, 8ed9:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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