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BioLiP
>protein
AATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAIS
IGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRG
IFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPA

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6bsl:A 201 201 1.0000 1.0000 1.0000 6.38e-153 6bsl:B, 6bsm:A, 6btn:A, 6btn:B, 6bto:A, 6bto:B, 6btp:A, 6btp:B, 6btq:A, 6btq:B, 3edg:A, 3edh:A
2 3edi:A 195 201 0.8358 0.8615 0.8358 1.11e-126
3 3vtg:A 200 187 0.3881 0.3900 0.4171 2.92e-40
4 3lqb:A 198 186 0.3632 0.3687 0.3925 3.20e-37
5 8a28:A 382 191 0.3483 0.1832 0.3665 7.13e-37 8a28:B
6 3lq0:A 235 202 0.3433 0.2936 0.3416 2.84e-33 1ast:A, 6ht9:A, 6ht9:C, 1iaa:A, 1iab:A, 1iac:A, 1iae:A, 1qji:A, 1qjj:A, 6saz:A, 6saz:C
7 4gwm:A 561 192 0.3383 0.1212 0.3542 5.55e-32 7aq1:A, 7aq1:B, 7auw:A, 7auw:C, 4gwm:B, 4gwn:A
8 7uac:H 546 186 0.3134 0.1154 0.3387 2.41e-25 7uab:E, 7uab:H, 7uae:A, 7uaf:B, 7uaf:A, 7uaf:C, 7uaf:D, 7uai:E, 7uai:B, 7uai:C, 7uai:D
9 7uab:A 481 185 0.2736 0.1143 0.2973 9.93e-14 7uab:D
10 5gwd:A 239 170 0.2239 0.1883 0.2647 7.87e-05 5czw:A, 5gwd:B, 5zjk:A, 5zjk:B, 5zjk:C, 5zjk:D, 5zjk:E, 5zjk:F, 5zjk:G, 5zjk:H, 5zjk:I, 5zjk:J, 5zjk:K, 5zjk:L, 5zjk:M, 5zjk:N, 5zjk:O, 5zjk:P, 5zjk:Q, 5zjk:R
11 2aig:P 201 39 0.0697 0.0697 0.3590 0.42 3aig:A, 4aig:A, 1iag:A
12 7lyt:A 712 56 0.0896 0.0253 0.3214 1.3 7lys:A, 7m5o:A
13 1rm8:A 169 110 0.1443 0.1716 0.2636 4.2
14 2o7d:A 515 49 0.0846 0.0330 0.3469 4.6 2o7d:D, 2o7d:B, 2o7d:C, 2o7d:E, 2o7d:H, 2o7d:F, 2o7d:G, 2o7e:A, 2o7e:D, 2o7e:B, 2o7e:C, 2o7e:E, 2o7e:H, 2o7e:F, 2o7e:G
15 8h3x:C 357 23 0.0547 0.0308 0.4783 5.2 8h3y:A, 8h3y:B, 8h3y:C, 3p24:A, 3p24:B, 3p24:C, 3p24:D, 7pnd:A, 7pnd:B, 7pol:A, 7poo:A, 7poo:B, 7poq:A, 7poq:B, 7pou:A, 7pou:B, 8wem:C, 8wem:A, 8weo:B, 8weo:A
16 1dth:A 202 39 0.0647 0.0644 0.3333 6.5 1atl:A, 1atl:B, 1dth:B, 1htd:A, 1htd:B
17 8fpj:A 1345 43 0.0697 0.0104 0.3256 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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