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BioLiP
>protein
AATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDHQ
A

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2koo:A 81 81 1.0000 1.0000 1.0000 4.02e-52 2kop:A, 2koq:A, 2kor:A, 2kos:A
2 2fac:A 77 68 0.3827 0.4026 0.4559 1.76e-13 2fac:B, 2fad:A, 2fad:B, 2fae:A, 4keh:C, 4keh:D, 1l0i:A, 6n3p:I, 6n3p:L, 6n3p:J, 3ny7:B, 7nyw:G, 7nyx:G, 7nyy:G, 7nyz:G, 7nz0:G, 7nz2:G1, 7nz2:G2, 7nz2:G3, 7nz2:G4, 7nz3:G1, 7nz3:G2, 7nz4:G1, 7nz4:G2, 1t8k:A, 5usr:K, 5vcb:f, 5vcb:e, 5vcb:d, 5vcb:F, 5vcb:D, 5vcb:X, 6w1d:C, 6w98:B
3 2eht:A 77 64 0.3210 0.3377 0.4062 6.57e-12
4 2x2b:A 76 57 0.3457 0.3684 0.4912 6.70e-12
5 3gzl:A 81 66 0.2963 0.2963 0.3636 9.35e-10 2fq0:A, 2fq2:A, 3gzm:B
6 8jfh:E 79 79 0.3704 0.3797 0.3797 2.00e-09 8jfn:B
7 2qnw:A 80 64 0.3210 0.3250 0.4062 4.51e-09
8 6lvu:A 78 74 0.3333 0.3462 0.3649 8.28e-09 6lvu:B
9 8iuf:AB 88 58 0.2963 0.2727 0.4138 1.57e-08 8j9h:AB, 8j9i:AB, 8j9j:AB
10 7zmb:Q 85 46 0.2840 0.2706 0.5000 2.48e-08 7zm7:O, 7zmb:O, 7zme:Q, 7zmg:O, 7zmg:Q
11 7b0n:U 88 75 0.3827 0.3523 0.4133 4.21e-08 6rfq:Q, 6rfr:Q, 6y79:Q
12 6sga:Fc 84 74 0.2840 0.2738 0.3108 6.16e-08 6sgb:Fc, 6yxy:EK
13 7arc:U 84 66 0.3086 0.2976 0.3788 2.23e-07 7ard:U
14 7ar7:T 84 77 0.2840 0.2738 0.2987 3.47e-07 7ar8:T, 8bq6:T
15 8iuf:AC 92 58 0.2840 0.2500 0.3966 4.50e-07 8j9h:AC, 8j9i:AC, 8j9j:AC
16 8e73:AB 85 54 0.2469 0.2353 0.3704 9.89e-07
17 8ba0:U 85 55 0.2593 0.2471 0.3818 1.09e-06 8ba0:T, 8esz:AC
18 8bee:U 87 49 0.2469 0.2299 0.4082 2.57e-06 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
19 7ak6:U 88 57 0.2469 0.2273 0.3509 5.66e-05 7a5h:w, 7ak6:T, 8c2s:T, 8c2s:U, 8ca3:T, 8ca5:T, 8ca5:U, 6g2j:U, 6g72:U, 5gup:O, 5gup:X, 5lnk:j, 5lnk:X, 6odd:A, 7oi6:w, 7oi8:w, 7oie:w, 8olt:T, 8om1:U, 5ool:w, 5oom:w, 8pw7:T1, 8q0a:T, 8q0a:U, 8q0f:U, 8q0o:U, 8q1p:T, 8q1u:T, 8q1y:U, 8q25:T, 8q45:T, 8q46:T, 8q46:U, 8q47:T, 8q47:U, 8q49:U, 6q9b:AB, 6q9d:AA, 6qa9:AA, 6qa9:AB, 6qbx:AA, 6qbx:AB, 6qc5:AA, 6qc6:AA, 6qc7:AA, 6qc8:AB, 7qsd:T, 7qsl:T, 7qsn:T, 8qu5:w, 7r41:T, 7r43:T, 7r44:T, 7r45:T, 7r46:T, 7r47:T, 7r47:U, 7r48:T, 7r4c:T, 7r4d:T, 7r4f:U, 7r4g:T, 8rgt:T, 8ud1:1U, 8ueo:1T, 8ueo:1U, 8uep:1U, 8ueq:1T, 8ueq:1U, 8uer:1T, 8uer:1U, 8ues:1T, 8ues:1U, 8uet:1T, 8ueu:1T, 8ueu:1U, 8uev:1T, 8uew:1T, 8uew:1U, 8uex:1T, 8uex:1U, 8uey:1T, 8uey:1U, 8uez:1T, 8uez:1U, 8ugh:1U, 8ugi:1U, 8ugj:1U, 8ugn:1T, 8ugn:1U, 8ugn:5U, 8ugr:1U, 8ugr:5T, 8ugr:5U, 7v2d:X, 7v2f:X, 7v2k:X, 7v30:X, 7v32:X, 7v33:G, 7v3m:X, 7vbl:X, 7vbp:X, 7vwj:G, 7vwl:X, 7vy1:X, 7vye:X, 7vyi:X, 7vzv:X, 7w00:X, 7w0h:X, 7w1o:X, 7w1p:X, 7w20:X, 7w2k:X, 7w2l:X, 7w31:G, 7w32:X, 7w35:X, 7w4c:X, 7w4g:X, 7w4j:X, 7w4k:X, 7w4l:X, 7w4n:X, 7zdh:X, 7zdm:j, 7zdm:X, 7zdp:X, 7zdp:j, 6zka:X, 6zkb:X, 6zkc:X, 6zkd:j, 6zke:X, 6zkf:X, 6zkg:X, 6zkh:X, 6zkh:j, 6zki:X, 6zkj:X, 6zkk:X, 6zkl:X, 6zkm:X, 6zkm:j, 6zkn:X, 6zkn:j, 6zko:X, 6zkp:X, 6zkp:j, 6zkr:X, 6zks:X, 6zkt:X, 6zku:X, 6zr2:T, 6zr2:U, 6ztq:U
20 7b0n:T 81 47 0.3086 0.3086 0.5319 7.65e-04 6gcs:O, 7o6y:O, 6rfq:O, 6rfr:O, 6rfs:O, 6y79:O
21 2ll8:A 101 49 0.1975 0.1584 0.3265 0.002
22 2k0x:A 86 59 0.2469 0.2326 0.3390 0.004 2kg6:A, 2kg8:A, 2kg9:A, 2kga:A, 2kgc:A, 2kgd:A, 2kge:A, 2mvu:A, 2mvv:A
23 7auf:A 89 78 0.3210 0.2921 0.3333 0.009
24 2lki:A 83 42 0.1605 0.1566 0.3095 0.033
25 2fva:A 82 51 0.2099 0.2073 0.3333 0.30
26 4bph:A 85 32 0.1728 0.1647 0.4375 0.33
27 6x67:C 478 26 0.1852 0.0314 0.5769 0.52 5lme:A, 6x67:D, 6x68:C, 6x68:D
28 2lml:A 87 33 0.1481 0.1379 0.3636 0.61
29 5yrp:A 224 55 0.1605 0.0580 0.2364 1.2 5yrp:B
30 8abs:A 394 23 0.1111 0.0228 0.3913 1.4 8abr:A, 5ofq:A, 5ofq:B, 5ofq:C, 5ofq:D
31 8arv:A 255 33 0.1358 0.0431 0.3333 2.1 8arv:B
32 3b0g:A 538 24 0.1235 0.0186 0.4167 2.3 3b0j:A, 3b0l:A, 3b0m:A, 3b0n:A, 3vkp:A, 3vkq:A, 3vkr:A, 3vks:A, 3vkt:A, 3vlx:A, 3vly:A, 3vlz:A, 3vm0:A, 3vm1:A
33 4h2y:D 63 24 0.0988 0.1270 0.3333 3.0
34 4h2w:D 75 24 0.0988 0.1067 0.3333 5.2 4h2x:D
35 2kr5:A 89 46 0.1852 0.1685 0.3261 6.5
36 7u56:A 346 30 0.1358 0.0318 0.3667 8.9 7u56:B
37 4lj3:A 256 25 0.1235 0.0391 0.4000 9.6 4lj3:B, 4lyk:A, 4lyk:B, 4lyk:C, 4lyk:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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