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BioLiP
>protein
AATIRYHEGDISAEDAARYKGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRIAAGQKQAPNLVHMLADPARQKIFH
YGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYTDRHGLKDNLKEMLEVDISKAQQSSDWAAETLSPAQLEYAASDVLYL
HALRDKLTARLIRDGRIEHADACFAFLPTRAKLDLLGWDETDIFAHS

The query sequence (length=207) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zo4:A 207 207 1.0000 1.0000 1.0000 6.03e-154 5zo4:B, 5zo5:A, 5zo5:B
2 7mpt:A 206 207 0.6763 0.6796 0.6763 4.51e-99 7mpt:B, 7mpu:B
3 7mpo:F 207 204 0.6812 0.6812 0.6912 3.26e-93 7mpl:A, 7mpl:E, 7mpl:C, 7mpl:I, 7mpl:G, 7mpl:K, 7mpl:O, 7mpl:M, 7mpm:A, 7mpm:E, 7mpm:C, 7mpm:I, 7mpm:G, 7mpm:K, 7mpm:O, 7mpm:M, 7mpn:A, 7mpn:C, 7mpn:E, 7mpn:G, 7mpn:I, 7mpn:K, 7mpn:M, 7mpn:O, 7mpo:A, 7mpo:B, 7mpo:C, 7mpo:D, 7mpo:E, 7mpo:G, 7mpo:H, 7mpp:A, 7mpp:E, 7mpp:G, 7mpp:C, 7mpp:K, 7mpp:I, 7mpp:M, 7mpp:O, 7mpq:G, 7mpq:K, 7mpq:A, 7mpq:E, 7mpq:C, 7mpq:I, 7mpq:O, 7mpq:M, 7mqb:A, 7mqb:C, 7mqb:E, 7mqb:G, 7mqb:I, 7mqb:K, 7mqb:M, 7mqb:O, 7mqc:A, 7mqc:C, 7mqc:E, 7mqc:G, 7mqc:I, 7mqc:K, 7mqc:M, 7mqc:O, 7mqd:A, 7mqd:C, 7mqd:E, 7mqd:G, 7mqd:I, 7mqd:K, 7mqd:M, 7mqd:O, 7mqe:A, 7mqe:C, 7mqe:E, 7mqe:G, 7mqe:I, 7mqe:K, 7mqe:M, 7mqe:O, 7mqf:A, 7mqf:C, 7mqf:E, 7mqf:G, 7mqf:I, 7mqf:K, 7mqf:M, 7mqf:O, 7mqg:A, 7mqg:C, 7mqg:E, 7mqg:G, 7mqg:I, 7mqg:K, 7mqg:M, 7mqg:O, 7mqh:A, 7mqh:C, 7mqh:E, 7mqh:G, 7mqh:I, 7mqh:K, 7mqh:M, 7mqh:O, 7mqi:A, 7mqi:C, 7mqi:E, 7mqi:G, 7mqi:I, 7mqi:K, 7mqi:M, 7mqi:O
4 1yt3:A 375 170 0.2512 0.1387 0.3059 4.68e-13
5 3sah:B 382 138 0.2077 0.1126 0.3116 2.91e-07
6 5vzj:J 460 141 0.1787 0.0804 0.2624 1.23e-05
7 5c0w:K 576 141 0.1739 0.0625 0.2553 5.15e-05 5c0y:B, 5c0y:A, 2hbk:A, 2hbl:A, 2hbm:A, 5k36:J, 4oo1:J, 4wfd:A
8 6k18:A 199 153 0.1932 0.2010 0.2614 7.75e-04 6k18:B, 6k1a:A, 6k1a:B, 6k1b:A, 6k1b:B, 6k1d:A, 6k1d:B, 6k1e:A, 6k1e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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