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BioLiP
>protein
AARVGAFLKNAWDKEPVLVVSFVVGGLAVILPPLSPYFKYSVMINKATPYNYPVPVRDDGNMPDVPSHPQDPQGPSLEWL
KKL

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5xtc:U 83 83 1.0000 1.0000 1.0000 2.44e-56 5xtd:U, 5xth:U, 5xti:U, 5xti:BU
2 8qoy:A 1036 52 0.1928 0.0154 0.3077 0.87
3 2z86:C 603 48 0.1446 0.0199 0.2500 1.9 2z86:A, 2z86:B, 2z86:D, 2z87:A, 2z87:B
4 6tjv:F 600 42 0.1446 0.0200 0.2857 1.9
5 7r76:A 1834 23 0.1205 0.0055 0.4348 2.2 7r77:A
6 8e9i:M 518 37 0.1928 0.0309 0.4324 2.2 8e9g:M, 8e9h:M
7 2gmh:A 581 36 0.1807 0.0258 0.4167 5.0 2gmh:B, 2gmj:A, 2gmj:B
8 2x27:X 209 33 0.1446 0.0574 0.3636 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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