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BioLiP
>protein
AARRCQSQLERANLRPCEQHLMQKIQRSQHQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLP
QQCGLRAPQRCDLDV

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8db4:E 95 95 1.0000 1.0000 1.0000 5.70e-62
2 3ob4:A 474 106 0.9684 0.1941 0.8679 2.54e-59
3 1vf1:A 226 87 0.2105 0.0885 0.2299 0.012 1vf2:A, 1vf2:B, 1vf3:A, 1vf3:B
4 2ds2:D 68 54 0.1895 0.2647 0.3333 0.51 2ds2:B
5 5ag2:C 195 34 0.0947 0.0462 0.2647 7.7 5ag2:A, 3dc5:A, 3dc5:C, 6elk:A, 6elk:C, 6qzm:A, 6qzm:C, 6qzn:A, 6qzn:C, 6s0d:A, 6s0d:C, 4x9q:A, 4x9q:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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