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BioLiP
>protein
AAQTRRRERRAEKQAQWKAANPLLVGVSAKPVNRPILSLNRKPKSRVESALNPIADLTVAEYHKQIESNLQRIERKNQRT
WYSKP

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gov:N 110 85 0.9765 0.7545 0.9765 2.91e-52 5lm7:N, 5lm7:F, 5ms0:N, 1qfq:B
2 6n13:B 322 32 0.1412 0.0373 0.3750 0.44 2jmo:A
3 7vax:F 471 31 0.1529 0.0276 0.4194 2.2 3a5c:E, 8gxw:E, 8gxx:E, 6r0w:E, 6r0y:D, 6r10:F, 7val:E, 7van:E, 7vap:E, 7vaq:E, 7var:E, 7vas:E, 7vat:E, 7vav:E, 7vaw:E, 7vay:E, 7vb0:E, 3w3a:E, 3w3a:M
4 2rgo:B 530 68 0.2353 0.0377 0.2941 4.6
5 4zyn:B 385 29 0.1176 0.0260 0.3448 6.2 4k7d:A, 4k7d:B, 4k7d:C, 4k95:A, 4k95:B, 4k95:C, 4k95:D, 4k95:E, 4k95:F, 4k95:G, 4k95:H, 4k95:I, 4k95:J, 4k95:K, 4k95:L, 7us1:A, 8w31:A, 4zyn:A
6 2rgo:A 557 69 0.2235 0.0341 0.2754 8.7 2rgh:A
7 7ase:f 1523 23 0.1176 0.0066 0.4348 9.9 7ask:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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