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BioLiP
>protein
AAPTLYIFPHAGGTAKDYVAFSREFSADVKRIAVQYPGESIPTLADEIFAMMKPSARIDDPVAFFGHSMGGMLAFEVALR
YQSAGHRVLAFFVSACSAPGHIRYKQLQDLSDREMLDLFTRMTGMNPDFFTDDEFFVGALPTLRAVRAIAGYSCPPETKL
SCPIYAFIGDKDWIATQDDMDPWRDRTTEEFSIRVFPGDHFYLNDNLPELVSDIEDKTLQWHD

The query sequence (length=223) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fw5:A 233 232 0.9955 0.9528 0.9569 3.52e-164 6fvj:D, 6fvj:E, 6fw5:B, 6fw5:D
2 6fvj:B 212 224 0.9417 0.9906 0.9375 1.71e-152 6fvj:A, 6fvj:C, 6fvj:F, 6fvj:G, 6fvj:H, 6fw5:C
3 2h7y:A 280 230 0.2332 0.1857 0.2261 1.24e-04 9cgl:A, 9cgl:B, 9cgn:A, 9cgn:B, 2h7x:A, 2h7x:B, 2h7y:B, 2hfj:A, 2hfk:A, 2hfk:B
4 6ecd:A 245 217 0.2332 0.2122 0.2396 0.002 6ece:B
5 6n8e:A 1332 233 0.2108 0.0353 0.2017 0.002
6 4zxh:A 1314 128 0.1435 0.0244 0.2500 0.014 4zxi:A
7 6ecf:D 265 234 0.2287 0.1925 0.2179 0.13 6ece:A, 6ecf:A, 6ecf:B, 6ecf:C, 6ecf:E, 6ecf:F
8 5d3k:A 269 152 0.1749 0.1450 0.2566 0.36 5d3z:A
9 6eb3:B 268 36 0.0762 0.0634 0.4722 0.51 6eb3:A, 6eb3:C, 6eb3:D
10 2wjs:A 519 93 0.1076 0.0462 0.2581 0.59
11 5ja2:A 1238 98 0.1121 0.0202 0.2551 0.96 5ja1:A, 5t3d:A
12 3a6z:C 616 49 0.0673 0.0244 0.3061 1.4 3a6z:A, 3a70:A, 3a70:C, 2z8x:A, 2z8z:A, 2zj6:A, 2zj7:A, 2zvd:A, 2zvd:C
13 6skz:A 2638 56 0.0897 0.0076 0.3571 1.5 6sl0:A, 6sl0:B
14 6sl1:A 2652 56 0.0897 0.0075 0.3571 1.5 6sky:A, 6sky:B
15 3i6y:A 278 48 0.0717 0.0576 0.3333 3.0 3i6y:B, 3s8y:A
16 5olu:A 310 68 0.0628 0.0452 0.2059 4.7
17 8hgw:A 288 38 0.0673 0.0521 0.3947 6.7 8hgw:B, 8hgw:C, 8hgw:D
18 3bdn:A 234 63 0.0807 0.0769 0.2857 7.1 3bdn:B, 2hnf:A, 2ho0:A, 1lli:A, 1lli:B, 1lmb:3, 1lmb:4, 1rio:A, 1rio:B
19 2vsq:A 1273 30 0.0538 0.0094 0.4000 7.4
20 6khm:K 312 39 0.0628 0.0449 0.3590 8.1 6khl:A, 6khl:B, 6khm:A, 6khm:B, 6khm:C, 6khm:D, 6khm:E, 6khm:F, 6khm:G, 6khm:H, 6khm:I, 6khm:J, 6khm:L, 6khm:M, 6khm:N, 6khm:O, 6khm:P, 6khm:Q, 6khm:R, 6khm:S, 6khm:T, 6khm:U, 6khm:V, 6khm:X, 6khm:Y, 6khm:W, 6khm:Z
21 3uar:A 203 42 0.0673 0.0739 0.3571 8.3
22 3fcx:B 275 58 0.0897 0.0727 0.3448 9.9 3fcx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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