Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKHILCGYCPPPPPPPPPPPPPPPPPPPP

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ce4:5 68 68 1.0000 1.0000 1.0000 1.38e-39
2 5aj4:B5 110 48 0.7059 0.4364 1.0000 1.28e-31 7a5f:03, 7a5g:03, 7a5h:0, 7a5i:03, 7a5j:0, 7a5k:03, 8any:0, 6gaw:B5, 6gb2:B5, 6i9r:0, 3j7y:0, 3j9m:0, 8k2a:Lf, 8k2b:Lf, 7l08:0, 7l20:0, 7nqh:B5, 7nql:B5, 7nsh:B5, 7nsi:B5, 7nsj:B5, 6nu2:0, 6nu3:0, 7o9k:0, 7o9m:0, 7odr:0, 7ods:0, 7odt:0, 7of0:0, 7of2:0, 7of3:0, 7of4:0, 7of5:0, 7of6:0, 7of7:0, 7og4:0, 7oi6:0, 7oi7:0, 7oi8:0, 7oi9:0, 7oia:0, 7oib:0, 7oic:0, 7oid:0, 7oie:0, 8oin:BH, 8oiq:BH, 8oir:BH, 8oit:BH, 5ool:0, 5oom:0, 7pd3:0, 8pk0:0, 7po4:0, 7qh6:0, 7qh7:0, 7qi4:0, 7qi5:0, 7qi6:0, 8qsj:0, 8qu1:0, 8qu5:0, 4v19:5, 6vlz:0, 6vmi:0, 8xt0:Lf, 8xt1:Lf, 8xt2:Lf, 8xt3:Lf, 6ydp:B5, 6ydw:B5, 6zm5:0, 6zm6:0, 6zs9:0, 6zsa:0, 6zsb:0, 6zsc:0, 6zsd:0, 6zse:0, 6zsg:0
3 3j6b:W 112 49 0.2647 0.1607 0.3673 0.010 5mrc:W, 5mre:W, 5mrf:W
4 6ywe:W 59 48 0.2500 0.2881 0.3542 0.10 6yws:W, 6ywv:W, 6ywx:W, 6ywy:W
5 6o8w:2 56 50 0.2059 0.2500 0.2800 1.2 7nhk:4, 6o8x:2, 6o8y:2, 6o8z:2, 6o90:2, 7p7q:4, 7p7r:4, 7p7s:4, 7p7t:4, 7p7u:4, 6w6p:2, 6wu9:2

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218