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BioLiP
>protein
AAPESFDEVYKGRRIQGRPAHEHGGGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDELQGAPLLP

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5z0d:B 80 77 1.0000 0.9625 1.0000 2.25e-52 2ahk:B, 2ahl:B, 3aws:B, 3awt:B, 3awu:B, 3awv:B, 3aww:B, 3awz:B, 3ax0:B, 7cit:B, 7ciy:B, 5z0e:B, 5z0f:B, 5z0h:B, 5z0i:B, 5z0j:B, 5z0k:B, 5z0l:B, 2zmx:B, 2zmy:B, 2zmz:B, 2zwe:B, 2zwf:B, 2zwg:B
2 6szw:C 186 44 0.1688 0.0699 0.2955 0.044 6szw:A, 6szw:B
3 5ztf:A 972 18 0.1429 0.0113 0.6111 0.080
4 7w7t:A 1021 18 0.1429 0.0108 0.6111 0.080 7bt2:A, 7e7s:A, 6hxb:A, 6jju:A, 6lle:A, 6lly:A, 6ln5:A, 6ln6:A, 6ln7:A, 6ln8:A, 6ln9:A, 5mpm:A, 2voy:B, 2voy:H, 2voy:E, 2voy:K, 7w7u:A, 7w7v:A, 7w7w:A
5 5zmw:A 1000 18 0.1299 0.0100 0.5556 0.37 5a3q:A, 5a3r:A, 5a3s:A, 5a3s:B, 2agv:A, 2agv:B, 3ar2:A, 3ar3:A, 3ar4:A, 3ar5:A, 3ar6:A, 3ar7:A, 3ar8:A, 3ar9:A, 3b9b:A, 3b9r:A, 3b9r:B, 3ba6:A, 4bew:A, 4bew:B, 2by4:A, 2c88:A, 2c8k:A, 2c8l:A, 2c9m:A, 2c9m:B, 2dqs:A, 2ear:A, 2eat:A, 2eau:A, 3fgo:A, 3fgo:B, 3fpb:A, 3fps:A, 4h1w:A, 6hef:A, 1iwo:A, 1iwo:B, 4j2t:A, 3j7t:A, 4kyt:A, 3n5k:A, 3n5k:B, 3n8g:A, 3nal:A, 3nam:A, 3nan:A, 4nab:A, 5ncq:A, 2o9j:A, 2oa0:A, 8owa:A, 8owl:A, 6rb2:A, 1su4:A, 1t5s:A, 1t5t:A, 3tlm:A, 4uu0:A, 4uu1:A, 1vfp:A, 1vfp:B, 3w5a:A, 3w5a:B, 3w5b:A, 1wpg:A, 1wpg:B, 1wpg:C, 1wpg:D, 5xa7:A, 5xa8:A, 5xa9:A, 5xaa:A, 4xou:A, 1xp5:A, 6yaa:A, 4ycl:A, 4ycm:A, 4ycn:A, 2yfy:A, 6yso:A, 6yso:B, 2zbd:A, 2zbe:A, 2zbe:B, 2zbf:A, 2zbg:A
6 8dhl:B 853 47 0.2597 0.0234 0.4255 1.1 8dhl:A
7 7cge:A 257 21 0.1169 0.0350 0.4286 2.0 7cge:D
8 4pof:A 255 27 0.1429 0.0431 0.4074 4.7 5iy0:A, 5iy0:B, 5iy0:C, 5iy0:D, 5iy0:E, 5iy0:F, 4pof:B, 4pof:C, 4pof:D, 4pof:E, 4pof:F, 4pog:A, 4pog:E, 4pog:F, 4pog:K, 4pog:L, 4pog:G, 4pog:H, 4pog:I, 4pog:J, 4pog:B, 4pog:C, 4pog:D, 4ywl:A, 4ywl:B, 4ywl:C, 4ywl:D, 4ywl:E, 4ywl:F, 4ywl:G, 4ywl:H, 4ywl:I, 4ywl:J, 4ywm:A, 4ywm:B, 4ywm:C, 4ywm:D, 4ywm:E, 4ywm:F, 4ywm:G, 4ywm:H, 4ywm:I, 4ywm:J
9 9f8x:A 572 39 0.1558 0.0210 0.3077 9.0 9f8x:B, 9f8x:C, 9f8x:D, 1qni:A, 1qni:B, 1qni:C, 1qni:D, 1qni:E, 1qni:F
10 5j46:A 169 34 0.1299 0.0592 0.2941 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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