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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AAPANAVTADDPTAIALKYNQDATKSERVAAARPGLPPEEQHCANCQFMQANVGEGDWKGCQLFPGKLINVNGWCASWTL
KAG

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1js2:A 89 85 0.8795 0.8202 0.8588 1.22e-48 3a38:A, 3a39:A, 6aiq:A, 6air:A, 2ams:A, 1b0y:A, 7c52:b, 1cku:A, 1cku:B, 5d8v:A, 1eyt:A, 2fla:A, 1hip:A, 1hrq:A, 1hrr:A, 1iua:A, 1js2:B, 1js2:C, 1js2:D, 1neh:A, 1noe:A, 7vos:A, 5wqq:A, 5wqr:A
2 3hip:A 82 81 0.7470 0.7561 0.7654 1.79e-44 3hip:B, 3hip:C
3 1hpi:A 71 75 0.3373 0.3944 0.3733 8.12e-13
4 1hlq:A 75 76 0.2771 0.3067 0.3026 9.97e-06 1hlq:B, 1hlq:C
5 3h31:A 74 46 0.2289 0.2568 0.4130 5.41e-04
6 7oso:A 412 19 0.1205 0.0243 0.5263 0.45 4d47:A, 4d47:B, 4d47:C, 4d47:D, 4d47:E, 4d47:F, 4d47:G, 4d47:H, 6frw:A, 6rv5:A
7 4eb5:C 138 30 0.1687 0.1014 0.4667 0.94 4eb5:D, 4eb7:C
8 4fi4:A 407 34 0.1687 0.0344 0.4118 1.3 4fi4:B, 4fi4:C
9 1cp9:B 553 59 0.2169 0.0325 0.3051 1.5
10 6z1p:Av 206 35 0.1325 0.0534 0.3143 2.2
11 1vfs:A 383 38 0.1446 0.0313 0.3158 2.9 1vfh:A, 1vfs:B, 1vft:A, 1vft:B
12 3thu:A 405 33 0.1325 0.0272 0.3333 3.2 3thu:B, 3thu:C
13 3oa6:A 84 52 0.2048 0.2024 0.3269 4.4 3oa6:B
14 2vq2:A 220 32 0.1084 0.0409 0.2812 6.1
15 4gme:A 403 33 0.1566 0.0323 0.3939 7.1 4gme:C, 3vcn:A, 3vcn:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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