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BioLiP
>protein
AALEVLFQGPGNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTEL
EPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7kri:A 127 124 1.0000 0.9764 1.0000 3.38e-90 7kri:B, 7kri:C, 7n3k:A, 7n3k:B, 7n3k:C, 7n3k:D, 7n3k:E, 7n3k:F, 7n3k:G, 7n3k:H
2 7mjp:A 366 25 0.0887 0.0301 0.4400 2.1 7mit:A, 7mit:B, 7mit:C, 7mit:D, 7mjo:A, 7mjo:B, 7mjo:C, 7mjo:D, 7mjp:B, 7mjp:D, 7mjq:A, 7mjq:B, 7mjq:C
3 4ngh:L 215 84 0.2258 0.1302 0.3333 2.1 5cil:L, 5cin:L, 7ekb:L, 7ekk:L, 2fx7:L, 2fx8:L, 2fx8:M, 2fx8:N, 2fx8:O, 2fx9:L, 2fx9:M, 3h3p:L, 3h3p:M, 6mtp:L, 6mtp:B, 4nhc:L, 6o3g:D, 6o3g:L, 6o3g:B, 1tzg:L, 1tzg:M, 4wy7:L, 5x08:L, 4xaw:L, 4xbe:L, 4xbp:F, 4xc1:L, 4xc3:L, 4xcc:L, 4xcf:L
4 4psi:A 125 11 0.0887 0.0880 1.0000 4.3 4psi:B
5 8id2:A 95 22 0.0887 0.1158 0.5000 6.1 8id2:B, 7p0v:A
6 6yvb:C 324 18 0.0968 0.0370 0.6667 6.2 6ypo:A, 6ypo:B, 6ys6:B, 6ys6:C, 6ysp:A, 6ysp:B, 6ysp:C, 6yvb:A, 6yvb:B, 6yvb:D, 6yvb:E, 6yvb:F, 6yw9:A, 6yw9:B, 6yw9:C, 6ywj:A, 6ywj:B
7 6nqz:A 206 39 0.1129 0.0680 0.3590 6.7
8 4rhh:C 696 36 0.1129 0.0201 0.3889 7.3 4rhh:A, 4rhh:B, 4rhh:D
9 7tys:A 361 25 0.0806 0.0277 0.4000 9.1 6baa:A, 6baa:D, 6baa:B, 6baa:C, 6c3o:A, 6c3o:B, 6c3o:C, 6c3o:D, 6c3p:A, 6c3p:B, 6c3p:D, 6c3p:C, 6jb1:A, 6jb1:G, 6jb1:C, 6jb1:E, 8ti1:D, 8ti1:A, 8ti1:B, 8ti1:C, 8ti2:D, 8ti2:A, 8ti2:B, 8ti2:C, 5twv:A, 5twv:C, 5twv:E, 5twv:G, 7tys:D, 7tys:B, 7tys:C, 7tyt:A, 7tyt:D, 7tyt:B, 7tyt:C, 7u1e:B, 7u1e:C, 7u1e:D, 7u1e:A, 7u1q:A, 7u1q:B, 7u1q:C, 7u1q:D, 7u1s:A, 7u1s:D, 7u1s:B, 7u1s:C, 7u24:A, 7u24:D, 7u24:B, 7u24:C, 7u6y:A, 7u6y:B, 7u6y:C, 7u6y:D, 7uaa:B, 7uaa:C, 7uaa:D, 7w4p:A, 7w4p:C, 7w4p:E, 7w4p:G, 5ykf:A, 5ykf:C, 5ykf:E, 5ykf:G, 5ykg:A, 5ykg:C, 5ykg:E, 5ykg:G, 5yw8:C, 5yw8:E, 5yw8:G, 5yw8:A, 5yw9:C, 5yw9:E, 5yw9:G, 5yw9:A, 5ywa:A, 5ywa:C, 5ywa:E, 5ywa:G, 5ywb:A, 5ywb:C, 5ywb:E, 5ywb:G, 5ywc:A, 5ywc:C, 5ywc:E, 5ywc:G
10 9c20:A 451 41 0.1129 0.0310 0.3415 9.9 8url:A, 8uvv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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