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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AAIVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWS
GVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYM
VDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLL
CSDNPNARECRLA

The query sequence (length=253) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3zwm:H 253 253 1.0000 1.0000 1.0000 0.0 3i9j:A, 3i9j:B, 3i9k:B, 3i9l:A, 3i9o:A, 3i9o:B, 1r15:A, 1r15:B, 1r15:C, 1r15:D, 1r15:E, 1r15:F, 1r15:G, 1r15:H, 1r16:A, 1r16:B, 3zwm:A, 3zwm:B, 3zwm:C, 3zwm:D, 3zwm:E, 3zwm:F, 3zwm:G, 3zwn:A, 3zwn:B, 3zwo:A, 3zwo:B, 3zwo:C, 3zwo:E, 3zwo:F, 3zwo:G, 3zwo:H, 3zwp:A, 3zwp:B, 3zwp:C, 3zwp:D, 3zwp:E, 3zwp:F, 3zwp:G, 3zwp:H, 3zwv:A, 3zwv:H, 3zwv:B, 3zwv:C, 3zwv:D, 3zwv:E, 3zwv:F, 3zwv:G, 3zww:A, 3zww:B, 3zww:C, 3zww:D, 3zww:E, 3zww:F, 3zww:G, 3zww:H, 3zwx:A, 3zwx:B, 3zwx:C, 3zwx:D, 3zwx:E, 3zwx:F, 3zwx:G, 3zwx:H, 3zwy:A, 3zwy:B, 3zwy:C, 3zwy:D, 3zwy:E, 3zwy:F, 3zwy:G, 3zwy:H
2 1isg:A 250 249 0.3320 0.3360 0.3373 4.09e-48 1isg:B, 1ish:A, 1ish:B, 1isi:A, 1isi:B, 1isj:A, 1isj:B, 1ism:A, 1ism:B
3 7vke:A 255 248 0.3281 0.3255 0.3347 1.77e-41 8d0m:A, 3dzf:A, 3dzf:B, 3dzf:C, 3dzf:D, 3dzf:E, 3dzf:F, 3dzg:A, 3dzg:B, 3dzh:A, 3dzh:B, 3dzi:A, 3dzi:B, 3dzj:A, 3dzj:B, 3dzk:A, 3dzk:B, 6edr:A, 6edr:B, 4f45:A, 4f45:B, 4f46:A, 4f46:B, 3f6y:A, 2hct:A, 2hct:B, 2i65:A, 2i65:B, 2i66:A, 2i66:B, 2i67:A, 2i67:B, 3i9m:A, 3i9m:B, 3i9n:A, 3i9n:B, 2o3q:A, 2o3q:B, 2o3r:A, 2o3r:B, 2o3s:A, 2o3s:B, 2o3t:A, 2o3u:A, 2o3u:B, 3ofs:A, 3ofs:B, 3ofs:C, 3ofs:D, 3ofs:E, 3ofs:F, 4ogw:A, 8p8c:A, 2pgj:A, 2pgl:A, 3rok:A, 3rok:B, 3rom:A, 3rom:B, 3rop:A, 3rop:B, 3roq:A, 3roq:B, 4tmf:A, 4tmf:B, 3u4h:A, 3u4h:B, 3u4i:A, 6vua:A, 6vua:B, 4xjs:A, 4xjt:A
4 5bni:B 231 230 0.2846 0.3117 0.3130 5.00e-33
5 3kou:B 238 236 0.2925 0.3109 0.3136 5.57e-31 3ghh:B, 3kou:A, 3p5s:A, 3p5s:B
6 4hnn:F 320 64 0.0870 0.0688 0.3438 0.031 4hnn:A, 4hnn:B, 4hnn:C, 4hnn:D, 4hnn:E, 4hnn:G, 4hnn:H
7 4zz7:A 489 44 0.0632 0.0327 0.3636 3.4 4zz7:C, 4zz7:D, 4zz7:E, 4zz7:I, 4zz7:L
8 8sse:A 507 38 0.0514 0.0256 0.3421 5.1 8sse:B, 8sse:C, 8sse:D, 8sse:E, 8sse:F
9 5v96:A 467 87 0.0870 0.0471 0.2529 5.9 5v96:B, 5v96:C, 5v96:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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