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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AAIAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGV
CEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINA
GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALNLPFDVAVKVMSGTAAGKGHFTTSWPNKVLSGDLSPAFMIDLAHKD
LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGMTAK

The query sequence (length=294) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6smz:C 295 294 1.0000 0.9966 1.0000 0.0 6smy:A, 6smy:B, 6smy:C, 6smy:D, 6smz:A, 6smz:B, 6smz:D
2 3w6z:A 296 273 0.3265 0.3243 0.3516 1.74e-42 3w6u:A, 3ws7:A, 5xvh:A
3 2i9p:B 296 291 0.3129 0.3108 0.3162 2.66e-38 2i9p:A, 2i9p:C, 2i9p:D
4 3pef:A 287 281 0.2959 0.3031 0.3096 7.12e-37 3pef:B, 3pef:C, 3pef:D, 3pef:E, 3pef:F, 3pef:G, 3pef:H
5 3obb:A 295 285 0.3435 0.3424 0.3544 2.79e-35 3q3c:A
6 3pdu:A 287 279 0.2959 0.3031 0.3118 3.13e-35 3pdu:B, 3pdu:C, 3pdu:D, 3pdu:F, 3pdu:E, 3pdu:G, 3pdu:H
7 5je8:B 294 284 0.2653 0.2653 0.2746 1.37e-33 5je8:A, 5je8:C, 5je8:D
8 5y8i:A 292 294 0.3163 0.3185 0.3163 3.43e-31 5y8g:A, 5y8g:B, 5y8h:A, 5y8h:B, 5y8i:B, 5y8j:A, 5y8j:B, 5y8k:A, 5y8k:B, 5y8l:A, 5y8l:B, 5y8m:A, 5y8m:B, 5y8n:A, 5y8n:B, 5y8o:A, 5y8o:B, 5y8p:A, 5y8p:B
9 2uyy:A 292 282 0.2517 0.2534 0.2624 1.27e-27 2uyy:D
10 2cvz:C 289 271 0.2857 0.2907 0.3100 2.41e-26 2cvz:A, 2cvz:B, 1wp4:A, 1wp4:B, 1wp4:C, 1wp4:D
11 8j43:A 285 301 0.2653 0.2737 0.2591 5.30e-12 8j43:B
12 5u5g:A 286 246 0.2007 0.2063 0.2398 1.82e-10 5u5g:B, 5u5g:C, 5u5g:D
13 8bk1:A 288 302 0.2483 0.2535 0.2417 6.36e-09 8bj5:A, 8bj5:B, 8bj5:C, 8bj5:D, 8bk1:B, 8bk1:C, 8bk1:D
14 7pua:FM 327 209 0.1633 0.1468 0.2297 1.79e-07 6sga:FM, 6sgb:FM
15 6vpb:B 324 228 0.1803 0.1636 0.2325 3.85e-07
16 6jiz:C 295 305 0.2211 0.2203 0.2131 1.86e-06 6jit:B, 6jit:C, 6jiz:B
17 4oqy:A 268 82 0.0884 0.0970 0.3171 2.30e-04
18 7a3w:B 293 73 0.0782 0.0785 0.3151 3.02e-04 7a3w:A
19 8j44:A 293 74 0.0816 0.0819 0.3243 5.09e-04 8j44:B, 8whg:B, 8whg:E, 8whg:F
20 4d3f:B 289 111 0.1020 0.1038 0.2703 0.001
21 5g6r:B 289 72 0.0714 0.0727 0.2917 0.002 5g6r:A, 5g6s:A, 5g6s:G, 5g6s:B, 5g6s:C, 5g6s:D, 5g6s:F, 5g6s:E, 5g6s:H
22 8qhe:A 284 104 0.0918 0.0951 0.2596 0.003 6sle:A, 6sle:C, 6sle:H, 6sle:D, 6sle:E, 6sle:F, 6sle:G
23 5a9t:A 286 152 0.1190 0.1224 0.2303 0.003 5a9s:A, 5a9s:B, 5fwn:A, 5fwn:B
24 8i4q:A 479 195 0.1497 0.0919 0.2256 0.007 8i4q:B
25 6eoi:B 287 42 0.0578 0.0592 0.4048 0.014 6eod:A, 6eod:H, 6eod:B, 6eod:G, 6eod:C, 6eod:D, 6eoh:A, 6eoh:B, 6eoi:A, 6h7p:A, 6h7p:B, 5ojl:A
26 5ocm:A 290 72 0.0680 0.0690 0.2778 0.018 5ocm:F, 5ocm:B, 5ocm:C, 5ocm:D, 5ocm:E
27 7y8m:B 288 43 0.0612 0.0625 0.4186 0.019 7y8l:A, 7y8l:B, 7y8l:C, 7y8l:D, 7y8m:A, 7y8m:C, 7y8m:D, 7y8n:A, 7y8n:B, 7y8o:A, 7y8o:B
28 8a3x:A 295 97 0.0986 0.0983 0.2990 0.020 8a3x:B, 8a3x:C, 8a3x:D, 8a5z:A, 8a5z:B
29 7cb5:B 467 212 0.1701 0.1071 0.2358 0.044 7cb2:A, 7cb2:B, 7cb2:C, 7cb2:D, 7cb5:A, 7cb5:C, 7cb5:D
30 7osn:B 291 72 0.0680 0.0687 0.2778 0.047 7osn:A, 7osn:C, 7osn:D, 7osn:E, 7osn:F
31 7og3:A 290 66 0.0782 0.0793 0.3485 0.062 7og3:B
32 3zhb:D 294 72 0.0782 0.0782 0.3194 0.079 3zhb:A, 3zhb:B, 3zhb:C
33 4j9v:A 456 40 0.0510 0.0329 0.3750 0.14 4j9u:H, 4j9u:G, 4j9u:E, 4j9u:F, 4j9v:B, 6v4k:E, 6v4k:F, 6v4k:G, 6v4k:H, 6v4l:C, 6v4l:D
34 8p2j:C 293 59 0.0578 0.0580 0.2881 0.17 8ozv:A, 8ozw:A, 8ozw:B, 8p2j:A, 8p2j:B, 8p2j:D, 8p2j:E, 8p2j:F, 8p2j:G, 8p2j:H, 8p2j:I
35 8jyt:C 286 72 0.0816 0.0839 0.3333 0.21 8jyt:A, 8jyt:B, 8jyt:D
36 3ggg:D 293 114 0.0952 0.0956 0.2456 0.52 2g5c:A, 2g5c:B, 2g5c:C, 2g5c:D, 3ggg:A, 3ggg:B, 3ggg:C, 3ggo:A, 3ggo:B, 3ggo:D, 3ggo:C, 3ggp:A, 3ggp:B, 3ggp:D, 3ggp:C
37 4j7c:B 217 33 0.0442 0.0599 0.3939 0.59 2hms:A, 2hms:B, 2hms:C, 2hms:D, 2hmt:A, 2hmt:B, 2hmu:A, 2hmu:B, 2hmv:A, 2hmv:B, 2hmw:A, 2hmw:B, 4j7c:A, 4j7c:C, 4j7c:D, 4j7c:E, 4j7c:F, 4j7c:G, 4j7c:H, 4j90:A, 4j90:B, 4j91:A, 4j91:B, 4j91:C, 4j91:D, 8k16:A, 8k16:B, 8k1k:A, 8k1k:B, 8k1s:A, 8k1s:B, 8k1s:C, 8k1s:D, 8k1s:E, 8k1s:F, 8k1s:G, 8k1s:H, 8k1t:A, 8k1t:B, 8k1t:C, 8k1t:D, 8k1t:E, 8k1t:F, 8k1t:G, 8k1t:H, 8k1u:A, 8k1u:B, 8k1u:C, 8k1u:D, 8k1u:E, 8k1u:F, 8k1u:G, 8k1u:H, 1lsu:A, 1lsu:B, 6s2j:A, 6s2j:B, 6s5b:A, 6s5b:B, 6s5b:C, 6s5b:D, 6s5b:E, 6s5b:F, 6s5b:G, 6s5b:H, 6s5c:A, 6s5c:B, 6s5d:A, 6s5d:B, 6s5e:A, 6s5e:B, 6s5e:C, 6s5e:D, 6s5e:E, 6s5e:F, 6s5e:G, 6s5e:H, 6s5g:A, 6s5g:B, 6s5g:C, 6s5g:D, 6s5g:E, 6s5g:F, 6s5g:G, 6s5g:H, 6s5n:A, 6s5n:B, 6s5n:C, 6s5n:D, 6s5n:E, 6s5n:F, 6s5n:G, 6s5n:H, 6s5o:A, 6s5o:B, 6s5o:C, 6s5o:D, 6s5o:E, 6s5o:F, 6s5o:G, 6s5o:H, 6s7r:A, 6s7r:B, 6s7r:C, 6s7r:D, 6s7r:E, 6s7r:F, 6s7r:G, 6s7r:H, 6s7r:I, 6s7r:J, 6s7r:K, 6s7r:L, 6s7r:M, 6s7r:N, 6s7r:O, 6s7r:P, 8xmh:A, 8xmh:B, 8xmh:C, 8xmh:D, 8xmh:E, 8xmh:F, 8xmh:G, 8xmh:H, 8xmi:A, 8xmi:B, 8xmi:C, 8xmi:D, 8xmi:E, 8xmi:F, 8xmi:G, 8xmi:H
38 4om8:A 309 36 0.0544 0.0518 0.4444 0.74 4om8:B
39 8hr6:A 359 50 0.0544 0.0446 0.3200 0.80 8hr6:B
40 6smt:B 289 42 0.0476 0.0484 0.3333 1.1 6smt:A, 6smt:C, 6smt:D, 6smt:E
41 6toe:B 293 88 0.0816 0.0819 0.2727 1.3 6to4:A, 6to4:D, 6to4:B, 6to4:C, 6toe:A, 6toe:F, 6toe:C
42 1mfz:A 436 52 0.0544 0.0367 0.3077 1.3 1mfz:B, 1mfz:C, 1mfz:D, 1muu:C, 1muu:A, 1muu:B, 1muu:D, 1mv8:B, 1mv8:A, 1mv8:C, 1mv8:D
43 8hwy:A 287 301 0.2347 0.2404 0.2292 1.4 8hwy:B, 8jku:A, 8jku:B
44 6ach:A 364 48 0.0510 0.0412 0.3125 1.4 6ach:B, 6ach:C, 6ach:D, 6ach:E, 6ach:F, 6ach:G, 6ach:H
45 6yk9:A 341 37 0.0442 0.0381 0.3514 1.5 6yk9:B, 6yk9:C, 6yk9:E, 6yka:B, 6ykb:A, 6ykb:C
46 1lss:A 132 32 0.0272 0.0606 0.2500 2.7 1lss:B, 1lss:C, 1lss:D
47 1bw9:A 350 42 0.0612 0.0514 0.4286 2.9 1bw9:B, 1bxg:A, 1bxg:B, 1c1d:A, 1c1d:B, 1c1x:A, 1c1x:B
48 6ggu:A 344 59 0.0578 0.0494 0.2881 3.1 4jjf:A, 4jjf:B, 4jjg:A, 4jjg:B, 5ok4:A
49 6sle:B 261 65 0.0646 0.0728 0.2923 3.2
50 2jkv:A 482 216 0.1667 0.1017 0.2269 3.3 2jkv:B, 2jkv:C, 2jkv:D, 2jkv:E, 2jkv:F, 1pgn:A, 1pgo:A, 1pgp:A, 1pgq:A, 5uq9:E, 5uq9:F
51 3g8r:B 336 38 0.0408 0.0357 0.3158 3.8
52 6b2w:A 333 70 0.0578 0.0511 0.2429 4.1 6b2w:B
53 3d1l:B 259 227 0.1531 0.1737 0.1982 5.2
54 1omo:A 320 59 0.0476 0.0437 0.2373 6.1 1omo:B
55 8c79:A 478 203 0.1463 0.0900 0.2118 6.2 8c79:B
56 3t95:A 314 78 0.0680 0.0637 0.2564 6.9
57 1q2v:A 518 70 0.0646 0.0367 0.2714 7.3 1q2v:B, 1q2v:C, 1q2v:D, 1q3q:A, 1q3q:B, 1q3q:C, 1q3q:D, 1q3r:A, 1q3s:A, 1q3s:B, 1q3s:C, 1q3s:D, 1q3s:E, 1q3s:F, 1q3s:G, 1q3s:H
58 2w90:B 471 209 0.1667 0.1040 0.2344 7.7 2w8z:A, 2w8z:B, 2w90:A
59 1orr:A 338 54 0.0680 0.0592 0.3704 7.9 1orr:B, 1orr:C, 1orr:D
60 5bw4:B 224 28 0.0374 0.0491 0.3929 8.0 5bw4:A, 5d1n:A
61 4ypo:A 325 64 0.0578 0.0523 0.2656 8.4 4ypo:B
62 7zp9:B 133 35 0.0408 0.0902 0.3429 8.5 7zp9:H, 7zp9:D, 7zp9:E, 7zp9:F, 7zp9:A, 7zp9:J, 7zp9:L, 7zpo:H, 7zpo:D, 7zpo:E, 7zpo:F, 7zpo:A, 7zpo:B, 7zpo:J, 7zpo:L, 7zpr:H, 7zpr:D, 7zpr:E, 7zpr:F, 7zpr:A, 7zpr:B, 7zpr:J, 7zpr:L
63 4q3a:C 260 80 0.0782 0.0885 0.2875 9.6 4j43:A, 4j43:B, 4j49:A, 4j49:B, 4j4b:A, 4j4b:B, 4j4h:A, 4j4h:B, 4j4h:C, 4j4h:D, 4jk3:A, 4jk3:B, 4q39:A, 4q39:B, 4q3a:A, 4q3a:B, 4q3a:D, 4q3b:A, 4q3b:B, 4q3b:C, 4q3b:D, 4q3c:A, 4q3c:B, 4q3c:C, 4q3c:D, 4q3d:A, 4q3d:B, 4q3d:C, 4q3d:D, 4q3e:A, 4q3e:B
64 3cif:A 338 91 0.0952 0.0828 0.3077 9.8 3cif:B, 3cif:C, 3cif:D, 3cps:A, 3cps:B, 8pvf:A, 1vsv:A, 1vsv:B, 1vsv:C, 1vsv:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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