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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGN
KTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLG
KNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATP
ITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQID
SDNKLGVGSDDTVAVGIVYQF

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6zhp:B 341 341 1.0000 1.0000 1.0000 0.0 7fdy:A, 7fdy:B, 7fdy:C, 7ff7:A, 7ff7:B, 7ff7:C, 3fyx:A, 4gcp:A, 4gcp:B, 4gcq:A, 4gcq:B, 4gcs:A, 1gfm:A, 1gfn:A, 1gfo:A, 1gfp:A, 1gfq:A, 4lse:A, 4lse:B, 4lse:C, 4lsi:A, 4lsi:B, 4lsi:C, 1mpf:A, 5nuo:C, 5nuo:A, 5nuo:E, 5nuq:A, 5nuq:B, 5nuq:D, 5nuq:F, 5nur:E, 5nur:C, 5nur:A, 3o0e:A, 3o0e:F, 3o0e:C, 3o0e:D, 3o0e:E, 3o0e:B, 2omf:A, 2zfg:A, 6zhv:B, 6zhv:A, 6zhv:C, 2zld:A, 2zld:B
2 6ene:A 329 340 0.7683 0.7964 0.7706 0.0 6ene:C, 6ene:B
3 2j1n:A 346 360 0.6217 0.6127 0.5889 5.09e-129 8i8r:A, 8i8r:C, 8i8r:B, 8i8x:A, 8i8x:C, 8i8x:B, 2j1n:B, 2j1n:C
4 4kr8:C 340 345 0.5777 0.5794 0.5710 1.12e-128 4kr4:C, 4kra:C
5 5fvn:A 342 355 0.6276 0.6257 0.6028 5.65e-128 5fvn:B, 5fvn:C, 5fvn:D, 5fvn:E, 5fvn:F
6 2xe5:B 343 357 0.6188 0.6152 0.5910 7.93e-128 2xe5:D
7 8pyz:F 347 358 0.6100 0.5994 0.5810 3.88e-125 5nup:A, 5nup:B, 5nup:C, 5o79:C, 5o79:A, 5o79:B, 8pyz:E, 8pyz:C, 7q3t:A, 7q3t:B, 7q3t:C, 7q3t:E, 7q3t:D, 7q3t:F, 6rck:C, 6rd3:A, 6rd3:B, 6rd3:C, 6rd3:D, 6rd3:E, 6rd3:F, 7szi:C
8 5o9c:A 348 361 0.5894 0.5776 0.5568 2.40e-118 5o9c:D, 5o9c:B
9 5o77:A 337 351 0.5689 0.5757 0.5527 3.58e-115
10 5nxu:A 352 361 0.5015 0.4858 0.4737 1.79e-92 5nxu:B, 5nxu:C
11 6ehb:C 320 352 0.2375 0.2531 0.2301 6.76e-08 6ehb:B, 6ehc:A, 6ehc:B, 5onu:A, 5onu:B, 5onu:C
12 5jbd:B 855 45 0.0557 0.0222 0.4222 0.74 5jbd:A, 5jbe:A, 5jbe:B, 5jbf:A, 5jbf:B
13 6i97:A 763 60 0.0499 0.0223 0.2833 0.87 8b43:A, 6i96:A, 6i97:B, 6i98:A, 6z8a:A
14 6ifr:A 694 36 0.0440 0.0216 0.4167 2.3 6ifl:A
15 6nud:J 741 36 0.0440 0.0202 0.4167 2.3 6ifk:A, 6ifn:A, 6ify:A, 6ifz:A, 6ig0:A, 6nue:J
16 6ifu:A 706 36 0.0440 0.0212 0.4167 2.3
17 5eyt:A 472 74 0.0645 0.0466 0.2973 4.8
18 7ofx:B 665 60 0.0499 0.0256 0.2833 5.2 7ofx:A, 7ofx:C, 7ofx:D, 5ohs:A, 5ohs:B, 5ohs:C, 5ohs:D, 5ohs:E, 5ohs:F, 5ohs:G, 5ohs:H, 5ohy:A, 5ohy:B, 5ohy:C, 5ohy:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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