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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASY
NVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHG
TDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTH
VGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGG
RERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK

The query sequence (length=356) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3p9i:A 357 356 1.0000 0.9972 1.0000 0.0 3p9c:A, 3p9i:B, 3p9i:C, 3p9i:D, 3p9k:A, 3p9k:B, 3p9k:C, 3p9k:D
2 4pgh:D 358 359 0.7781 0.7737 0.7716 0.0 4pgh:A, 4pgh:B, 4pgh:C
3 6i71:A 353 352 0.6404 0.6459 0.6477 3.28e-175 6i71:B, 6i72:A, 6i72:B, 6i73:A, 6i73:B, 6yjw:A, 6yjw:B
4 1kyw:C 361 350 0.6180 0.6094 0.6286 1.30e-171 1kyw:F, 1kyz:A, 1kyz:C, 1kyz:E
5 7v6l:B 347 349 0.6152 0.6311 0.6275 9.07e-167 7v6j:A, 7v6j:B, 7v6l:A
6 5cvj:D 361 352 0.5815 0.5734 0.5881 1.98e-154 5cvj:A, 5cvj:B, 5cvj:C, 5cvu:A, 5cvu:B, 5cvu:C, 5cvu:D, 5cvv:A, 5cvv:B, 3reo:A, 3reo:B, 3reo:C, 3reo:D, 3tky:A, 3tky:B, 3tky:C, 3tky:D
7 5xoh:A 348 346 0.5225 0.5345 0.5376 1.01e-135
8 7waq:D 365 365 0.4775 0.4658 0.4658 6.78e-111 7vb8:B, 7vb8:A, 7waq:B, 7waq:A, 7waq:C, 7war:B, 7war:A, 7was:A, 7was:B
9 6i6m:B 357 343 0.3989 0.3978 0.4140 4.59e-90 6i5z:A, 6i5z:B, 6i5z:D, 6i6k:A, 6i6k:B, 6i6l:A, 6i6l:B, 6i6m:A, 6i6n:A, 6i6n:B
10 6nej:B 346 342 0.3876 0.3988 0.4035 2.07e-86 6neg:A, 6neg:B, 6neh:A, 6neh:B, 6nej:A
11 1fp1:D 340 353 0.3848 0.4029 0.3881 5.79e-85 1fpq:A
12 5icc:A 352 332 0.3652 0.3693 0.3916 1.32e-64 5ice:A, 5icf:A
13 6cig:A 349 319 0.2584 0.2636 0.2884 2.80e-38 1fp2:A
14 6c5b:A 332 332 0.3006 0.3223 0.3223 1.62e-36 6c5b:B
15 2qyo:A 353 321 0.2556 0.2578 0.2835 1.46e-35 2qyo:B
16 4evi:A 360 333 0.2753 0.2722 0.2943 2.60e-32 4e70:A, 4e70:B, 4evi:B
17 1zg3:A 358 333 0.2753 0.2737 0.2943 1.26e-28 1zga:A, 1zgj:A, 1zhf:A
18 3lst:A 333 272 0.2303 0.2462 0.3015 2.33e-25 3lst:B
19 8bie:A 318 198 0.1657 0.1855 0.2980 1.74e-22 8bie:B, 8bij:A, 8bij:B
20 8bic:B 323 193 0.1713 0.1889 0.3161 6.69e-22 8bic:A
21 3gwz:A 339 221 0.1770 0.1858 0.2851 7.92e-21 3gwz:D, 3gwz:C, 3gwz:B, 3gxo:A, 3gxo:D, 3gxo:C, 3gxo:B
22 8bir:A 321 211 0.1629 0.1807 0.2749 6.86e-20 8big:A, 8big:B, 8big:C, 8big:D, 8big:E, 8big:F, 8big:G, 8big:H, 8bii:A, 8bii:B, 8bii:C, 8bii:D, 8bii:E, 8bii:F, 8bii:G, 8bii:H, 8bir:B
23 8bif:A 318 237 0.1770 0.1981 0.2658 5.34e-18 8bif:B, 8bif:C, 8bif:D
24 8bgt:A 319 211 0.1685 0.1881 0.2844 1.39e-16 8bgt:B, 8bgx:A, 8bgx:B, 8bgx:C, 8bgx:D, 8bgy:A, 8bgy:B, 8bgy:C, 8bgy:D, 8bgz:A, 8bgz:B, 8bgz:C, 8bgz:D, 8bh0:A, 8bh0:B, 8bh0:C, 8bh0:D, 8bh0:E, 8bh0:F, 8bh0:G, 8bh0:H, 8bib:A, 8bib:B, 8bib:C, 8bib:D, 8bid:A, 8bid:B, 8bid:C, 8bid:D, 8bih:A, 8bih:B, 8bih:C, 8bih:D, 8bih:E, 8bih:F, 8bih:G, 8bih:H, 8bih:I, 8bih:J, 8bih:K, 8bih:L
25 6clx:B 342 211 0.1517 0.1579 0.2559 3.42e-15 6clx:A
26 4a6d:A 345 215 0.1517 0.1565 0.2512 6.74e-14 4a6e:A
27 5i2h:A 335 105 0.1011 0.1075 0.3429 1.29e-11 5i2h:B
28 8tjj:C 330 228 0.1601 0.1727 0.2500 2.25e-10 8tjj:A, 8tjj:B, 8tjj:D, 8tjk:A, 8tjk:B
29 1qzz:A 340 149 0.1236 0.1294 0.2953 3.43e-10 1r00:A, 1xds:A, 1xds:B, 1xdu:A
30 7pg7:D 329 141 0.1264 0.1368 0.3191 4.16e-10
31 8pha:A 450 159 0.1292 0.1022 0.2893 6.86e-10 8pha:B
32 7clf:A 335 228 0.1685 0.1791 0.2632 6.93e-10 7clf:B
33 1x1a:A 337 142 0.1067 0.1128 0.2676 9.88e-10 1x1b:A, 1x1c:A, 1x1d:A
34 7y3h:A 396 156 0.1320 0.1187 0.3013 6.42e-09 8gx4:A, 8gzi:A
35 8xte:A 395 160 0.1320 0.1190 0.2938 1.30e-06 8xte:B, 8xte:C, 8xte:D, 8xte:E, 8xte:F, 8xtf:A, 8xtg:A, 8xtg:B, 8xtg:C, 8xtg:D, 8xtg:E, 8xtg:F
36 8har:A 357 293 0.2051 0.2045 0.2491 1.24e-05 8har:B
37 7wuy:A 393 157 0.1236 0.1120 0.2803 1.43e-05 7wuy:B, 7wvs:A, 7wvs:B, 7ww0:A, 7ww0:B
38 4u1q:A 341 190 0.1404 0.1466 0.2632 1.44e-05 4u1q:B, 4u1q:C, 4u1q:D, 4x3q:A, 4x3q:B, 4x3q:C, 4x3q:D
39 7wh9:A 476 104 0.0730 0.0546 0.2500 3.44e-05 7wh9:B, 7wh9:C
40 7wdq:A 336 291 0.1770 0.1875 0.2165 3.53e-05 7wdq:B, 7wdq:C, 7wdw:A, 7wdw:B, 7wdw:C, 7wdw:D
41 6inw:B 390 163 0.1124 0.1026 0.2454 1.43e-04 6inw:A, 6iv7:A, 6iv7:B, 6ix3:A, 6ix3:B, 6ix5:A, 6ix5:B, 6ix7:A, 6ix7:B, 6ix8:A, 6ix8:B, 6ix9:A, 6ix9:B, 6j1o:A, 6j1o:B, 6j24:B, 6j24:A, 6j46:A, 6j46:B, 5zzd:A, 5zzd:B
42 1tw2:B 350 335 0.2191 0.2229 0.2328 7.67e-04 5eeg:A, 5eeg:B, 5eeh:A, 5eeh:B, 5eeh:C, 5jr3:A, 5jr3:B, 5jr3:C, 7owb:A, 7oy1:A, 7oy1:B, 7pga:A, 7pga:B, 7pga:C, 7pga:D, 7pgj:A, 7phd:A, 7phd:B, 7phe:A, 7phe:B, 7phf:A, 7phf:D, 7phf:C, 1tw2:A, 1tw3:A, 1tw3:B, 4wxh:A, 4wxh:B
43 3i58:A 328 96 0.0787 0.0854 0.2917 0.003 3i53:A, 3i53:B, 3i58:B, 3i5u:A, 3i5u:B, 3i64:A, 3i64:B
44 7bqk:A 459 184 0.1180 0.0915 0.2283 0.040 7bqk:B, 7bql:A, 7bql:B
45 6dtn:B 233 45 0.0421 0.0644 0.3333 0.071 5cvd:A, 5cvd:B, 5cve:A, 5cve:B, 5e1b:A, 5e1b:B, 5e1d:A, 5e1d:B, 5e1m:A, 5e1m:B, 5e1o:A, 5e1o:B, 5e2a:A, 5e2a:B, 5e2b:A, 5e2b:B, 2ex4:A, 2ex4:B, 7k3d:B, 7k3d:A, 6kdq:A, 6kdq:B, 6pva:B, 6pvb:B, 7ss1:A, 7ss1:B, 7u1m:A, 7u1m:B, 6wh8:B, 6wh8:A, 6wj7:B
46 7bqo:A 451 117 0.0787 0.0621 0.2393 0.12
47 7phf:B 270 37 0.0309 0.0407 0.2973 0.56
48 6uk5:A 240 49 0.0449 0.0667 0.3265 1.2 6uk5:B
49 7sic:A 2773 157 0.0927 0.0119 0.2102 1.2 8oxo:A, 8oxo:B, 8oxp:A, 8oxp:B, 7sic:B, 7sid:A, 7sid:C
50 6wlf:B 434 127 0.0871 0.0714 0.2441 1.3 6wlf:A
51 7ni5:A 2791 157 0.0927 0.0118 0.2102 1.4 7ni4:A, 7ni4:B, 7ni5:B, 7ni6:A, 7ni6:B, 8oxq:A, 8oxq:B
52 8d3z:A 399 49 0.0393 0.0351 0.2857 1.9 8d3t:A, 8d3t:B, 8d3t:C, 8d3z:B
53 4gfr:A 529 97 0.0787 0.0529 0.2887 2.3 8i5j:A, 8i5j:B, 8i5k:A, 1zu0:A
54 7of5:C 338 61 0.0534 0.0562 0.3115 2.6 7of0:C, 7of3:C, 7of7:C
55 7pd3:x 366 61 0.0534 0.0519 0.3115 3.0 4fp9:A, 4fp9:C, 4fp9:D, 4fp9:F, 4fzv:A, 7o9k:A1, 7o9m:A1, 7odr:x, 7ods:x, 7odt:x, 7oic:x, 8pk0:x, 8qsj:x
56 6vg1:A 642 58 0.0506 0.0280 0.3103 4.4 6vg1:B
57 4kif:B 339 43 0.0365 0.0383 0.3023 7.1 4kib:A, 4kib:B, 4kic:A, 4kic:B, 4kif:A, 4kig:A, 4kig:B, 4m6x:A, 4m6x:B, 4m6y:A, 4m6y:B, 4m71:A, 4m71:B, 4m72:A, 4m72:B, 4m73:A, 4m73:B, 4m74:A, 4m74:B
58 5ez3:B 541 92 0.0730 0.0481 0.2826 7.3 5ez3:A, 5ez3:C, 5ez3:D
59 1fcv:A 324 43 0.0421 0.0463 0.3488 8.3
60 7mr4:C 1083 105 0.0758 0.0249 0.2571 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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