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BioLiP
>protein
AAAAAAAAAAAAAAAAVAAMAFGHVIGVAIVLGL

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zgb:K 59 33 0.4412 0.2542 0.4545 4.97e-04 7blz:K, 6fos:K, 5zgh:K
2 6tcl:K 60 25 0.3824 0.2167 0.5200 0.007 6tcl:KK
3 8wey:K 63 21 0.3824 0.2063 0.6190 0.009
4 6k61:k 78 22 0.3824 0.1667 0.5909 0.017 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
5 7lx0:T 44 13 0.3824 0.2955 1.0000 0.029 7lx0:k, 7lx0:K, 6pnj:K, 6pnj:T, 6pnj:k
6 8htu:K 81 23 0.4118 0.1728 0.6087 0.053 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
7 4l6v:K 80 18 0.2941 0.1250 0.5556 0.080 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
8 6igz:K 80 14 0.2941 0.1250 0.7143 0.11
9 4kt0:K 53 18 0.2941 0.1887 0.5556 0.17
10 6kif:K 78 21 0.2647 0.1154 0.4286 0.26 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
11 4y28:K 57 30 0.3824 0.2281 0.4333 0.35
12 7qco:K 65 24 0.2059 0.1077 0.2917 0.54 7qco:R, 7qco:r, 7qco:k
13 8wgh:K 83 21 0.3529 0.1446 0.5714 0.75
14 8bcv:K 88 21 0.3235 0.1250 0.5238 0.91 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
15 8j6z:K 84 12 0.2647 0.1071 0.7500 1.2 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
16 6vpv:K 78 21 0.2647 0.1154 0.4286 1.3 6vpv:k, 6vpv:9
17 8j7a:K 56 12 0.2647 0.1607 0.7500 1.3
18 7wfd:AK 65 30 0.3529 0.1846 0.4000 1.4 7wfe:BK, 7wg5:AK, 7wg5:BK
19 4xk8:k 46 27 0.3824 0.2826 0.4815 1.5 4xk8:K
20 8cmo:K 89 23 0.3824 0.1461 0.5652 2.0
21 7a4p:K 86 14 0.2647 0.1047 0.6429 2.7 6zzx:K, 6zzy:K
22 8asp:k 77 14 0.2059 0.0909 0.5000 3.2 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
23 7dr2:aK 69 18 0.2353 0.1159 0.4444 4.5 7dr0:K, 7dr2:cK

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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