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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AAAAAAAAAAAAAAAAAAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEK
GIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIVVWTDVIQVFF
LVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTL
AAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLPVGVKGVVF
AALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVS
PGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTS
SMFVTDRSFNIAAYGIMIVLAVLYTLFWVLYK

The query sequence (length=512) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3dh4:A 512 512 1.0000 1.0000 1.0000 0.0 3dh4:B, 3dh4:C, 3dh4:D
2 8hg7:A 590 431 0.2637 0.2288 0.3132 1.64e-61 8hb0:A, 8hdh:A, 8hez:A, 8hin:A, 7vsi:A, 7ynj:A, 7ynk:A
3 7sla:A 585 425 0.2559 0.2239 0.3082 1.82e-61 7sl8:A
4 7yni:A 566 419 0.2441 0.2208 0.2983 5.75e-60
5 7wmv:A 602 427 0.2480 0.2110 0.2974 1.43e-58
6 5nv9:A 480 420 0.2051 0.2188 0.2500 5.15e-16 5nva:A
7 7sl9:A 497 423 0.2031 0.2093 0.2459 2.65e-14
8 7uuz:A 501 422 0.1914 0.1956 0.2322 9.41e-14 7uv0:A
9 8j74:A 515 421 0.2109 0.2097 0.2565 2.99e-06 8j74:B, 8j75:A, 8j77:A
10 7qhs:G 756 114 0.0488 0.0331 0.2193 1.4 7z13:N, 7z13:Q
11 8p5e:G 825 114 0.0488 0.0303 0.2193 1.7 8kg6:M, 8kg8:M, 8p62:G, 8p63:G
12 4k36:A 381 55 0.0410 0.0551 0.3818 2.4 4k36:B, 4k37:A, 4k37:B, 4k38:B, 4k38:A, 4k39:B, 4k39:A
13 3k9b:C 453 78 0.0449 0.0508 0.2949 4.0
14 8x1n:A 591 22 0.0195 0.0169 0.4545 4.9
15 7pmk:Q 766 93 0.0449 0.0300 0.2473 6.8 7pmn:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218