Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AAAAAAAAAAAAAAAAAAAAAAAAAVAAMAFGHVIGVAIVLGLT

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zgb:K 59 40 0.3409 0.2542 0.3750 2.07e-04 7blz:K, 6fos:K, 5zgh:K
2 7lx0:T 44 14 0.3182 0.3182 1.0000 0.003 7lx0:k, 7lx0:K, 6pnj:K, 6pnj:T, 6pnj:k
3 6k61:k 78 39 0.3636 0.2051 0.4103 0.006 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
4 6tcl:K 60 25 0.2955 0.2167 0.5200 0.006 6tcl:KK
5 8wey:K 63 22 0.2955 0.2063 0.5909 0.010
6 8htu:K 81 23 0.3182 0.1728 0.6087 0.053 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
7 6igz:K 80 14 0.2273 0.1250 0.7143 0.062
8 4l6v:K 80 18 0.2273 0.1250 0.5556 0.074 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
9 4kt0:K 53 18 0.2273 0.1887 0.5556 0.19
10 6kif:K 78 14 0.1591 0.0897 0.5000 0.25 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
11 7qco:K 65 42 0.1818 0.1231 0.1905 0.27 7qco:R, 7qco:r, 7qco:k
12 4y28:K 57 30 0.2955 0.2281 0.4333 0.45
13 8bcv:K 88 38 0.2955 0.1477 0.3421 0.62 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
14 8j6z:K 84 12 0.2045 0.1071 0.7500 0.72 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
15 8wgh:K 83 12 0.2045 0.1084 0.7500 0.80
16 8j7a:K 56 12 0.2045 0.1607 0.7500 0.87
17 7wfd:AK 65 12 0.2045 0.1385 0.7500 1.0 7wfe:BK, 7wg5:AK, 7wg5:BK
18 7a4p:K 86 39 0.3182 0.1628 0.3590 1.1 6zzx:K, 6zzy:K
19 4xk8:k 46 12 0.2045 0.1957 0.7500 1.1 4xk8:K
20 8cmo:K 89 23 0.2955 0.1461 0.5652 1.6
21 6vpv:K 78 21 0.2045 0.1154 0.4286 1.8 6vpv:k, 6vpv:9
22 8asp:k 77 14 0.1591 0.0909 0.5000 3.0 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
23 7dr2:aK 69 18 0.1818 0.1159 0.4444 5.7 7dr0:K, 7dr2:cK

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218