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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AAAAAAAAAAAAAAAAAAAAAAAAAAADQVIGKARSRTLEMRLNRLSRVNGHQDKINKLEKVPMHIRRGMIDKHVKRIKK
YEQEAAEGGIVLSKVKKGQFRKIESTYKKDIERRIGGSIKARDKEKATKRERGLKISSVGRSTRNGLIVSKRDIARIS

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5wlc:NE 158 158 1.0000 1.0000 1.0000 9.80e-107
2 6ke6:RV 190 141 0.8354 0.6947 0.9362 6.30e-92 7ajt:JN, 6lqp:RV, 6lqq:RV, 6lqu:RV, 6zqa:JN, 6zqb:JN, 6zqc:JN
3 7suk:NE 163 131 0.8291 0.8037 1.0000 6.40e-92
4 6rxy:CU 131 63 0.1392 0.1679 0.3492 3.54e-04 6rxz:CU
5 6rxt:CU 176 63 0.1392 0.1250 0.3492 4.96e-04 5oql:0, 6rxu:CU, 6rxv:CU, 6rxx:CU
6 3wov:A 457 35 0.0949 0.0328 0.4286 1.8
7 4gq0:A 318 43 0.0823 0.0409 0.3023 2.7 4ga8:A, 4gab:A, 4gqg:A, 4i5x:A, 4icc:X, 4jih:A, 4jii:X, 5lik:X, 5liu:X, 5liw:X, 5lix:X, 5liy:X, 5m2f:X, 4wev:X, 4xzl:X, 4xzm:X, 4xzn:X, 5y7n:A, 1zua:X
8 1c9w:A 315 44 0.0823 0.0413 0.2955 3.7 1frb:A
9 8gtl:A 397 35 0.0823 0.0327 0.3714 4.9 8gtl:B
10 1afs:A 319 43 0.0696 0.0345 0.2558 6.0 1afs:B, 1lwi:A, 1lwi:B
11 3r0x:A 438 56 0.1329 0.0479 0.3750 6.0
12 8bwy:C 4264 84 0.1266 0.0047 0.2381 9.1
13 7p48:6 510 80 0.1203 0.0373 0.2375 9.1
14 7moq:C 4159 84 0.1266 0.0048 0.2381 9.3 6zyy:C
15 1b8h:B 228 31 0.0696 0.0482 0.3548 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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