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BioLiP
>dna
ttgtatttattgcaattttcgtgccaatttctg

The query sequence (length=33) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8f1k:B 34 33 1.0000 0.9706 1.0000 6.55e-13
2 8f1k:A 34 33 1.0000 0.9706 1.0000 6.55e-13
3 8f1i:B 33 33 1.0000 1.0000 1.0000 6.55e-13
4 5ui5:B 30 28 0.8485 0.9333 1.0000 3.94e-10 5ui5:O
5 5ui5:A 31 28 0.8485 0.9032 1.0000 3.94e-10 5ui5:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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