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BioLiP
>dna
tgacagcactgaatgtcaaaacaaaaccttcactcgcaactataatgggagctgtcacggatgca

The query sequence (length=65) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vwy:1 65 65 1.0000 1.0000 1.0000 2.65e-30 7vwz:1
2 7w5w:1 63 63 0.9692 1.0000 1.0000 3.43e-29
3 7vwy:2 64 40 0.6154 0.6250 1.0000 2.09e-16 7vwz:2
4 7w5w:2 63 39 0.6000 0.6190 1.0000 7.53e-16
5 7w5y:1 83 28 0.4308 0.3373 1.0000 9.81e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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