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BioLiP
>dna
tcctcttgtcaggccggaataactccctataatgcgtgacacggactctacgag

The query sequence (length=54) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7szj:X 57 54 1.0000 0.9474 1.0000 2.69e-24
2 7khe:X 54 54 1.0000 1.0000 1.0000 2.69e-24
3 7khb:X 60 57 1.0000 0.9000 0.9474 7.54e-20
4 7khi:X 36 36 0.6667 1.0000 1.0000 2.73e-14
5 7khc:Y 63 36 0.6667 0.5714 1.0000 2.73e-14
6 7khc:X 63 36 0.6667 0.5714 1.0000 2.73e-14
7 7khb:Y 64 61 1.0000 0.8438 0.8852 2.73e-14
8 7szj:Y 49 28 0.5185 0.5714 1.0000 7.65e-10
9 7khi:Y 28 28 0.5185 1.0000 1.0000 7.65e-10
10 7khe:Y 46 28 0.5185 0.6087 1.0000 7.65e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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