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BioLiP
>dna
tcccagctccctgctggctccgagtgggttctgccgctctc

The query sequence (length=41) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8w8e:T 45 41 1.0000 0.9111 1.0000 3.33e-17 8w8f:T
2 6gmh:T 48 41 1.0000 0.8542 1.0000 3.33e-17 6ted:T
3 8a40:T 41 41 1.0000 1.0000 1.0000 3.33e-17
4 8a3y:T 138 40 0.9756 0.2899 1.0000 1.20e-16
5 7ycx:d 45 41 0.9756 0.8889 0.9756 1.55e-15
6 8oeu:T 38 38 0.9268 1.0000 1.0000 1.55e-15 8oev:T, 8oew:T
7 8of0:T 37 37 0.9024 1.0000 1.0000 5.57e-15
8 7b0y:T 37 37 0.9024 1.0000 1.0000 5.57e-15
9 8p4b:T 35 35 0.8537 1.0000 1.0000 7.20e-14

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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