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BioLiP
>dna
taacagtggccttattaaatgacttctccatgatctac

The query sequence (length=38) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ff5:N 53 38 1.0000 0.7170 1.0000 1.38e-15
2 8ff4:N 85 38 1.0000 0.4471 1.0000 1.38e-15
3 8fcu:N 63 38 1.0000 0.6032 1.0000 1.38e-15
4 8fcj:N 38 38 1.0000 1.0000 1.0000 1.38e-15
5 8yha:T 47 29 0.7632 0.6170 1.0000 1.39e-10
6 8rdu:3 98 28 0.7368 0.2857 1.0000 4.98e-10
7 8bd5:C 41 28 0.7368 0.6829 1.0000 4.98e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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