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BioLiP
>dna
gttgggaaggggccct

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 7eyi:B 16 16 1.0000 1.0000 1.0000 32
2 7n5t:X 14 14 0.8125 0.9286 0.9286 4
3 4ati:C 16 16 0.6250 0.6250 0.6250 2
4 7eyi:D 18 16 1.0000 0.8889 1.0000 2
5 1nk2:A 16 16 0.5625 0.5625 0.5625 -3 1nk3:A
6 5e6c:D 16 16 0.5625 0.5625 0.5625 -3
7 6isg:D 16 16 0.5625 0.5625 0.5625 -3
8 6ish:D 16 16 0.5625 0.5625 0.5625 -3
9 7tqq:C 16 16 0.5625 0.5625 0.5625 -3 7tqq:H
10 8k3d:C 16 16 0.5625 0.5625 0.5625 -3
11 7n5s:X 14 14 0.8125 0.9286 0.9286 -7
12 1oh6:F 16 16 0.5000 0.5000 0.5000 -8 2wtu:F
13 1tk0:T 16 16 0.5000 0.5000 0.5000 -8
14 1zrf:Y 16 16 0.5000 0.5000 0.5000 -8
15 3mfk:C 16 16 0.5000 0.5000 0.5000 -8
16 5e6c:C 16 16 0.5000 0.5000 0.5000 -8
17 5yws:C 17 16 0.6875 0.6471 0.6875 -8
18 6khy:G 16 16 0.5000 0.5000 0.5000 -8
19 8ilw:B 16 16 0.5000 0.5000 0.5000 -8
20 1p7h:B 15 15 0.6250 0.6667 0.6667 -10 1p7h:D
21 2jej:P 15 15 0.6250 0.6667 0.6667 -10
22 2rdj:F 15 15 0.6250 0.6667 0.6667 -10
23 4kaz:B 15 15 0.6250 0.6667 0.6667 -10
24 5zu1:F 14 14 0.6250 0.7143 0.7143 -11
25 1by4:G 16 16 0.4375 0.4375 0.4375 -13 4cn7:C, 4cn7:G
26 1gtw:C 16 16 0.4375 0.4375 0.4375 -13
27 1w0u:C 16 16 0.4375 0.4375 0.4375 -13
28 2aq4:T 16 16 0.4375 0.4375 0.4375 -13 3bjy:T, 3gqc:F, 3gqc:H, 3gqc:J, 3gqc:L, 3iay:T
29 2gat:B 16 16 0.4375 0.4375 0.4375 -13 3gat:B
30 2ko0:B 16 16 0.4375 0.4375 0.4375 -13 2l1g:B
31 2ql2:E 16 16 0.4375 0.4375 0.4375 -13 2ql2:G
32 2rdj:D 16 16 0.4375 0.4375 0.4375 -13
33 3n78:C 16 16 0.4375 0.4375 0.4375 -13 3n7b:C
34 4atk:C 16 16 0.4375 0.4375 0.4375 -13 4atk:D, 5eyo:B, 5eyo:D
35 4gc7:F 16 16 0.4375 0.4375 0.4375 -13
36 4l0y:D 16 16 0.4375 0.4375 0.4375 -13 4l0z:D, 4l18:D, 4l18:H, 3ri4:C, 3ri4:F, 6vg2:B, 6vg2:E, 6vg8:B, 6vgd:B, 6vge:B, 6vgg:B, 3wu1:D
37 4q0z:D 17 16 0.6250 0.5882 0.6250 -13 4q0z:H, 4q10:D
38 5e6a:D 16 16 0.4375 0.4375 0.4375 -13
39 5e6b:D 16 16 0.4375 0.4375 0.4375 -13
40 5kkq:C 17 16 0.6250 0.5882 0.6250 -13 5kkq:F, 5t00:C, 5t00:F
41 5mf0:E 16 16 0.4375 0.4375 0.4375 -13
42 5ux0:F 16 16 0.4375 0.4375 0.4375 -13
43 5va0:D 16 16 0.4375 0.4375 0.4375 -13
44 5zmc:D 16 16 0.4375 0.4375 0.4375 -13
45 6fqp:L 16 16 0.4375 0.4375 0.4375 -13 6fqp:M, 6fqq:L, 6fqq:M, 6fqq:G, 6fqq:H
46 6khy:I 16 16 0.4375 0.4375 0.4375 -13
47 6xwh:A 16 16 0.4375 0.4375 0.4375 -13
48 7aeo:C 16 16 0.4375 0.4375 0.4375 -13
49 7d8t:D 16 16 0.4375 0.4375 0.4375 -13
50 7oyk:EEE 16 16 0.4375 0.4375 0.4375 -13 7oyk:LLL, 7oyk:GGG
51 7v9f:C 16 16 0.4375 0.4375 0.4375 -13 7v9g:C, 7v9g:F, 7v9g:I, 7v9g:L
52 7x5e:C 16 16 0.4375 0.4375 0.4375 -13 7x5e:G
53 7x5f:C 16 16 0.4375 0.4375 0.4375 -13 7x5f:G, 7x5g:C, 7x5g:G
54 8jsi:G 16 16 0.4375 0.4375 0.4375 -13 8jsi:H, 8wd8:G, 8wd8:H
55 1tf3:E 15 15 0.5625 0.6000 0.6000 -15
56 5gkh:C 15 15 0.5625 0.6000 0.6000 -15
57 2j6u:P 14 14 0.5625 0.6429 0.6429 -16 2jei:P, 6vnp:P, 6vnp:B, 6vnp:E, 6vnp:H
58 3vxv:C 14 14 0.5625 0.6429 0.6429 -16
59 3vxx:C 14 14 0.5625 0.6429 0.6429 -16 3vyb:C
60 6ig1:H 14 14 0.5625 0.6429 0.6429 -16 5zlv:H
61 5yux:C 18 16 0.6250 0.5556 0.6250 -17 5yuy:C, 5yuz:C, 5yv0:C, 5yv1:C, 5yv2:C
62 6xeo:C 18 16 0.6250 0.5556 0.6250 -17
63 7w7l:C 13 13 0.5625 0.6923 0.6923 -17
64 8j71:D 13 13 0.5625 0.6923 0.6923 -17 5xfp:C, 5xfp:D, 5xfq:C, 5xfr:E, 5xfr:F
65 1oh5:F 17 16 0.5625 0.5294 0.5625 -18
66 1oh7:F 17 16 0.5625 0.5294 0.5625 -18
67 1ryr:C 16 16 0.3750 0.3750 0.3750 -18
68 1tkd:P 16 16 0.3750 0.3750 0.3750 -18
69 1vol:C 16 16 0.3750 0.3750 0.3750 -18
70 1yfh:D 16 16 0.3750 0.3750 0.3750 -18 1yfh:F
71 2dy4:E 17 16 0.5625 0.5294 0.5625 -18
72 2i9t:C 17 16 0.5625 0.5294 0.5625 -18
73 3co6:B 16 16 0.3750 0.3750 0.3750 -18
74 3f73:C 16 16 0.3750 0.3750 0.3750 -18
75 3fyl:D 16 16 0.3750 0.3750 0.3750 -18 3g9m:D, 3g9o:C, 3g9p:C
76 3g6q:C 16 16 0.3750 0.3750 0.3750 -18 3g6u:D
77 3g6t:C 16 16 0.3750 0.3750 0.3750 -18
78 3hm9:X 16 16 0.3750 0.3750 0.3750 -18 3hvr:C, 3hvr:M, 4kpy:C, 4kpy:E, 4n41:E, 4nca:C, 4nca:E, 4ncb:C
79 3igc:D 16 16 0.3750 0.3750 0.3750 -18
80 3mq6:P 16 16 0.3750 0.3750 0.3750 -18
81 3n78:D 16 16 0.3750 0.3750 0.3750 -18 3n7b:D
82 3oa6:C 16 16 0.3750 0.3750 0.3750 -18
83 3oqn:E 16 16 0.3750 0.3750 0.3750 -18
84 3osp:T 16 16 0.3750 0.3750 0.3750 -18
85 3pw7:B 16 16 0.3750 0.3750 0.3750 -18 3pw7:F
86 4f4y:C 16 16 0.3750 0.3750 0.3750 -18 4f4y:P
87 4l0y:C 16 16 0.3750 0.3750 0.3750 -18 4l0z:C, 4l18:C, 4l18:G, 3ri4:B, 3ri4:E, 3wu1:C
88 4osj:H 16 16 0.3750 0.3750 0.3750 -18 4osr:H, 4ost:H, 4ot0:H, 4ot3:H
89 4oss:H 16 16 0.3750 0.3750 0.3750 -18
90 4r8u:D 16 16 0.3750 0.3750 0.3750 -18 5yur:B, 5yut:H, 5yuv:H, 5yyd:C
91 5e69:D 16 16 0.3750 0.3750 0.3750 -18
92 5e6b:C 16 16 0.3750 0.3750 0.3750 -18
93 5e6d:C 16 16 0.3750 0.3750 0.3750 -18
94 5gq9:C 16 16 0.3750 0.3750 0.3750 -18 5gq9:E
95 5hhh:T 16 16 0.3750 0.3750 0.3750 -18 5hhi:T
96 5krb:E 16 16 0.3750 0.3750 0.3750 -18
97 5va7:D 16 16 0.3750 0.3750 0.3750 -18
98 5zlv:G 16 16 0.3750 0.3750 0.3750 -18
99 6bch:B 16 16 0.3750 0.3750 0.3750 -18 6bch:E, 6bch:I, 6bch:N, 3r7p:B
100 6g1l:B 16 16 0.3750 0.3750 0.3750 -18
101 6jup:C 16 16 0.3750 0.3750 0.3750 -18
102 6l6y:A 16 16 0.3750 0.3750 0.3750 -18 6l6y:C
103 6pr5:B 16 16 0.3750 0.3750 0.3750 -18
104 6ryi:F 16 16 0.3750 0.3750 0.3750 -18
105 6ryl:G 16 16 0.3750 0.3750 0.3750 -18 6ryl:I
106 6usp:E 16 16 0.3750 0.3750 0.3750 -18
107 6xwh:B 16 16 0.3750 0.3750 0.3750 -18
108 7eof:C 16 16 0.3750 0.3750 0.3750 -18
109 7jn3:J 16 16 0.3750 0.3750 0.3750 -18 7jn3:L, 7ku7:J, 7ku7:L, 7kui:J, 7kui:L
110 7n5v:X 16 16 0.3750 0.3750 0.3750 -18 7n5v:H, 7n5v:D
111 7oa5:K 16 16 0.3750 0.3750 0.3750 -18
112 7t18:T 16 16 0.3750 0.3750 0.3750 -18 7t19:T, 7t1a:T, 7t1b:T, 6x74:T, 6x77:T
113 7u32:X 17 16 0.5625 0.5294 0.5625 -18 7u32:Y
114 7upz:C 16 16 0.3750 0.3750 0.3750 -18
115 7xhv:C 16 16 0.3750 0.3750 0.3750 -18 7xi3:C
116 7zwa:E 16 16 0.3750 0.3750 0.3750 -18
117 8dh1:A 16 16 0.3750 0.3750 0.3750 -18 8dh3:A, 8dh3:J, 8dh5:A, 8dh5:J
118 8ia3:C 17 16 0.5625 0.5294 0.5625 -18
119 8ipp:A 16 16 0.3750 0.3750 0.3750 -18
120 8tkm:D 17 16 0.5625 0.5294 0.5625 -18
121 8ygj:D 16 16 0.3750 0.3750 0.3750 -18
122 1bvo:D 15 15 0.5000 0.5333 0.5333 -20
123 1zrf:W 15 15 0.5000 0.5333 0.5333 -20
124 2ezv:F 15 15 0.5000 0.5333 0.5333 -20
125 4ptf:T 15 15 0.5000 0.5333 0.5333 -20
126 4u0y:E 15 15 0.5000 0.5333 0.5333 -20 4u0y:F
127 5dac:D 15 15 0.5000 0.5333 0.5333 -20
128 5ew2:E 15 15 0.5000 0.5333 0.5333 -20 4lz1:D
129 5yux:H 15 15 0.5000 0.5333 0.5333 -20 5yuz:H, 5yv0:H, 5yv1:H, 5yv2:H, 5yv3:H
130 6a4b:G 15 15 0.5000 0.5333 0.5333 -20 6a4b:H, 6a4b:I, 6a4b:L
131 6isi:D 15 15 0.5000 0.5333 0.5333 -20
132 6oes:J 15 15 0.5000 0.5333 0.5333 -20 6oes:I, 6oet:I, 6oet:J
133 7mtl:D 15 15 0.5000 0.5333 0.5333 -20
134 7oa5:L 15 15 0.5000 0.5333 0.5333 -20
135 7tqq:D 15 15 0.5000 0.5333 0.5333 -20
136 8tlq:T 15 15 0.5000 0.5333 0.5333 -20 8tlt:T, 6v93:T
137 8wus:D 15 15 0.5000 0.5333 0.5333 -20 8wut:D, 8wuu:D, 8wuv:D
138 1dew:Y 14 14 0.5000 0.5714 0.5714 -21 1dew:V
139 1f2i:A 14 14 0.5000 0.5714 0.5714 -21 1f2i:B, 1f2i:C, 1f2i:D, 1f2i:E, 1f2i:F
140 1n56:C 14 14 0.5000 0.5714 0.5714 -21 1n56:E
141 1qn8:C 14 14 0.5000 0.5714 0.5714 -21 1qn8:E
142 1qn9:C 14 14 0.5000 0.5714 0.5714 -21 1qn9:E
143 1qna:C 14 14 0.5000 0.5714 0.5714 -21 1qna:E
144 1qnb:C 14 14 0.5000 0.5714 0.5714 -21 1qnb:E
145 1qne:C 14 14 0.5000 0.5714 0.5714 -21 1qne:E, 6ueo:B, 6ueo:E, 6ueo:H, 6ueo:K, 1vtl:A, 1vtl:C, 1vto:C, 1vto:E
146 1qsy:C 14 14 0.5000 0.5714 0.5714 -21
147 2ago:B 14 14 0.5000 0.5714 0.5714 -21 2xc9:P
148 2asl:D 14 14 0.5000 0.5714 0.5714 -21 2asl:H
149 2bq3:P 14 14 0.5000 0.5714 0.5714 -21 2uvu:P, 2uvw:P
150 2c2e:P 14 14 0.5000 0.5714 0.5714 -21 2c2r:P, 4gc6:P, 2j6s:P, 2jef:P, 2jeg:P, 4juz:C, 4jv0:C, 6l84:P, 3t5k:C, 3t5l:C, 2uvr:P, 2uvv:P, 2v4q:P, 2w8k:P, 2w8l:P, 2w9a:P, 2w9b:C, 2w9b:D
151 2ibk:D 14 14 0.5000 0.5714 0.5714 -21
152 3vd2:E 14 14 0.5000 0.5714 0.5714 -21 3vd2:F, 3vd2:G, 3vd2:H
153 4ri8:E 14 14 0.5000 0.5714 0.5714 -21 4ri8:H
154 4wzw:B 14 14 0.5000 0.5714 0.5714 -21
155 5cg8:C 14 14 0.5000 0.5714 0.5714 -21
156 5j2n:P 19 16 0.6250 0.5263 0.6250 -21
157 6a4b:K 14 14 0.5000 0.5714 0.5714 -21
158 6eu1:R 19 16 0.6250 0.5263 0.6250 -21
159 6njq:E 14 14 0.5000 0.5714 0.5714 -21 6njq:C, 1qn3:C, 1qn3:E, 6uep:E, 6uep:C, 6uer:C, 6uer:E
160 7ef9:B 14 14 0.5000 0.5714 0.5714 -21
161 8udk:E 14 14 0.5000 0.5714 0.5714 -21
162 1skr:T 13 13 0.5000 0.6154 0.6154 -22
163 1t3n:P 13 13 0.5000 0.6154 0.6154 -22 1zet:P
164 3gik:D 13 13 0.5000 0.6154 0.6154 -22 3khh:D, 3khh:H, 3raq:D, 3raq:H, 3rbd:D
165 3gil:D 13 13 0.5000 0.6154 0.6154 -22 3gil:H, 3rax:D, 3rax:H, 3rbe:D
166 3kk3:P 18 16 0.5625 0.5000 0.5625 -22
167 3m9o:P 13 13 0.5000 0.6154 0.6154 -22
168 3pzp:P 13 13 0.5000 0.6154 0.6154 -22
169 3qoq:E 18 16 0.5625 0.5000 0.5625 -22
170 3rmp:F 13 13 0.5000 0.6154 0.6154 -22 3rmp:H
171 5d5x:D 13 13 0.5000 0.6154 0.6154 -22
172 6h67:U 13 13 0.5000 0.6154 0.6154 -22
173 6ide:C 18 16 0.5625 0.5000 0.5625 -22
174 6is7:D 18 16 0.5625 0.5000 0.5625 -22 6is7:F
175 6jup:G 18 16 0.5625 0.5000 0.5625 -22
176 6sy0:E 18 16 0.5625 0.5000 0.5625 -22 6sy0:F, 6sy0:G, 6sy0:H, 6sy0:K, 6sy0:L
177 7cli:D 18 16 0.5625 0.5000 0.5625 -22
178 7vp7:D 13 13 0.5000 0.6154 0.6154 -22
179 8dr1:K 13 13 0.5000 0.6154 0.6154 -22 8dr3:K, 8dr6:K
180 8dr5:I 13 13 0.5000 0.6154 0.6154 -22
181 9baq:G 18 16 0.5625 0.5000 0.5625 -22
182 9ja1:N 13 13 0.5000 0.6154 0.6154 -22
183 1am9:E 17 16 0.5000 0.4706 0.5000 -23 1am9:G
184 1dmu:F 17 16 0.5000 0.4706 0.5000 -23
185 1dp7:D 16 16 0.2500 0.2500 0.2500 -23
186 1e3m:F 17 16 0.5000 0.4706 0.5000 -23 3k0s:F, 1ng9:F, 1w7a:F, 1wb9:F, 1wbb:F, 1wbd:F, 3zlj:F
187 1efa:E 17 16 0.5000 0.4706 0.5000 -23 2pe5:E, 2pe5:F
188 1iaw:C 16 16 0.3125 0.3125 0.3125 -23
189 1l3v:C 16 16 0.3125 0.3125 0.3125 -23 3tar:C
190 1lei:C 17 16 0.5000 0.4706 0.5000 -23
191 1n4l:B 16 16 0.3125 0.3125 0.3125 -23
192 1nh2:F 16 16 0.3125 0.3125 0.3125 -23 1ytf:F
193 1nk2:B 16 16 0.3125 0.3125 0.3125 -23 1nk3:B
194 1oh6:E 16 16 0.3125 0.3125 0.3125 -23 2wtu:E
195 1trr:C 16 16 0.3125 0.3125 0.3125 -23 1trr:F, 1trr:I, 1trr:L
196 2c6y:C 16 16 0.3125 0.3125 0.3125 -23
197 2e42:D 16 16 0.3125 0.3125 0.3125 -23 2e43:D, 1gu4:D
198 2gat:C 16 16 0.3125 0.3125 0.3125 -23 3gat:C
199 2gzk:C 16 16 0.3125 0.3125 0.3125 -23
200 2i9t:D 17 16 0.5000 0.4706 0.5000 -23
201 2ia6:F 16 16 0.3125 0.3125 0.3125 -23
202 2is1:C 16 16 0.3125 0.3125 0.3125 -23
203 2ntz:Y 16 16 0.3125 0.3125 0.3125 -23 2ntz:E
204 2oyq:E 16 16 0.3125 0.3125 0.3125 -23
205 2ql2:F 16 16 0.3125 0.3125 0.3125 -23 2ql2:H
206 2qnf:C 16 16 0.3125 0.3125 0.3125 -23
207 2ve9:J 16 16 0.3125 0.3125 0.3125 -23 2ve9:L
208 2z33:B 16 16 0.3125 0.3125 0.3125 -23
209 3coa:B 16 16 0.3125 0.3125 0.3125 -23 3coa:E
210 3dpg:D 16 16 0.3125 0.3125 0.3125 -23
211 3ere:A 16 16 0.3125 0.3125 0.3125 -23 3laj:G, 3laj:I, 3laj:K, 3lap:G, 3lap:I, 3lap:K
212 3f27:A 16 16 0.3125 0.3125 0.3125 -23 3u2b:A
213 3g8u:C 16 16 0.3125 0.3125 0.3125 -23 3g8x:C, 3g97:D
214 3g99:D 16 16 0.3125 0.3125 0.3125 -23 3g9i:D
215 3gpy:B 16 16 0.3125 0.3125 0.3125 -23
216 3rnu:K 16 16 0.3125 0.3125 0.3125 -23
217 3veb:M 16 16 0.3125 0.3125 0.3125 -23
218 3veb:N 16 16 0.3125 0.3125 0.3125 -23
219 3w6v:B 16 16 0.3125 0.3125 0.3125 -23
220 3w6v:C 16 16 0.3125 0.3125 0.3125 -23
221 4bbs:T 17 16 0.5000 0.4706 0.5000 -23
222 4cn2:A 17 16 0.5000 0.4706 0.5000 -23
223 4f4z:P 12 12 0.5000 0.6667 0.6667 -23 4f4z:C
224 4gc6:T 16 16 0.3125 0.3125 0.3125 -23 2j6s:T, 2w9b:E, 2w9b:F
225 4gc7:C 13 13 0.6250 0.7692 0.7692 -23 4gc7:E
226 4gjp:H 16 16 0.3125 0.3125 0.3125 -23 6lew:J, 6lew:D
227 4gjr:J 17 16 0.5000 0.4706 0.5000 -23 4gjr:H
228 4iri:B 12 12 0.5000 0.6667 0.6667 -23
229 4k8x:T 16 16 0.3125 0.3125 0.3125 -23
230 4lvk:C 16 16 0.3125 0.3125 0.3125 -23 4lvm:E
231 4m3u:T 17 16 0.5000 0.4706 0.5000 -23
232 4m3y:T 16 16 0.3125 0.3125 0.3125 -23
233 4m45:T 16 16 0.3125 0.3125 0.3125 -23
234 4osi:I 16 16 0.3125 0.3125 0.3125 -23 4osj:I
235 4q5s:H 16 16 0.3125 0.3125 0.3125 -23
236 4ri9:V 12 12 0.5000 0.6667 0.6667 -23 4ri9:X, 4ria:E, 4ria:H, 4rib:Y, 4rib:V, 4ric:Y, 4ric:V
237 4s2q:B 16 16 0.3125 0.3125 0.3125 -23
238 4v8s:BS 16 16 0.3125 0.3125 0.3125 -23
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987 7aud:M 13 13 0.3750 0.4615 0.4615 -32 7aud:N, 7aud:O, 7aud:P, 7aud:Q, 7aud:R
988 7b0h:A 13 13 0.3750 0.4615 0.4615 -32 7b0h:C
989 7edb:E 13 13 0.3750 0.4615 0.4615 -32
990 7eyi:C 18 16 0.4375 0.3889 0.4375 -32
991 7jkp:D 13 13 0.3750 0.4615 0.4615 -32
992 7kr3:D 18 16 0.4375 0.3889 0.4375 -32 7kr4:D
993 7lys:D 18 16 0.4375 0.3889 0.4375 -32
994 7mlb:H 18 16 0.4375 0.3889 0.4375 -32
995 7mxq:A 13 13 0.3750 0.4615 0.4615 -32 7mxr:A, 7mxs:A, 7mxt:A, 7mxv:A, 7mxw:A, 3qe9:C, 5v04:A, 5v05:A, 5v06:A, 5v07:A, 5v08:A, 5v0b:A
996 7qd6:G 13 13 0.3750 0.4615 0.4615 -32
997 7tfk:I 13 13 0.3750 0.4615 0.4615 -32 7tfl:I
998 7tqq:G 13 13 0.3750 0.4615 0.4615 -32
999 7w27:B 13 13 0.3750 0.4615 0.4615 -32
1000 7w7l:D 13 13 0.3750 0.4615 0.4615 -32

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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