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BioLiP
>dna
gtgtttggtgtgtttgggtggtggccgttttcgttgtttttttctgtctcgtgcctggtgtcttgggtgttttccccttg
gcggttttttcgcgggggtctgcgcgttcgtgcgtttttgcggtgcttgtgcaaaagagcggcctcggcaccggg

The query sequence (length=155) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7xsz:N 155 155 1.0000 1.0000 1.0000 6.47e-80
2 7xsz:T 166 132 0.8516 0.7952 1.0000 3.95e-67
3 7unc:T 155 127 0.7677 0.7677 0.9370 5.22e-51
4 6a5o:T 178 127 0.7484 0.6517 0.9134 5.26e-46 8jh4:T
5 6j4w:T 171 124 0.7290 0.6608 0.9113 2.45e-44
6 6a5p:T 168 121 0.7097 0.6548 0.9091 1.14e-42
7 6a5o:N 169 119 0.6968 0.6391 0.9076 1.47e-41
8 7xtd:T 123 107 0.6387 0.8049 0.9252 6.85e-40
9 7xtd:N 112 70 0.4516 0.6250 1.0000 1.15e-32
10 7unc:N 140 73 0.4645 0.5143 0.9863 1.15e-32
11 7und:T 131 85 0.5032 0.5954 0.9176 2.50e-29
12 8jh4:N 166 58 0.3742 0.3494 1.0000 5.41e-26
13 7xt7:T 126 79 0.4194 0.5159 0.8228 2.55e-14
14 7xsx:T 108 79 0.4194 0.6019 0.8228 2.55e-14

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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