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BioLiP
>dna
gtgttaatgggttgtg

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 6ryl:G 16 16 1.0000 1.0000 1.0000 32 6ryl:I
2 3oqo:E 16 16 0.5625 0.5625 0.5625 -3 1rzr:R, 1rzr:B
3 4d1q:D 16 16 0.5625 0.5625 0.5625 -3 4d1q:F, 4d1q:J, 4d1q:L
4 6ryi:F 16 16 0.5625 0.5625 0.5625 -3
5 7yzg:B 16 16 0.5625 0.5625 0.5625 -3
6 3m4o:N 14 14 0.6875 0.7857 0.7857 -6
7 8gap:C 14 14 0.6875 0.7857 0.7857 -6 7lma:C, 7uy5:C, 7uy6:C
8 1hjc:B 16 16 0.5000 0.5000 0.5000 -8 1hjc:E
9 2c62:C 16 16 0.5000 0.5000 0.5000 -8
10 2kmk:C 16 16 0.5000 0.5000 0.5000 -8
11 2ko0:B 16 16 0.5000 0.5000 0.5000 -8 2l1g:B
12 2qnf:D 16 16 0.5000 0.5000 0.5000 -8
13 3hjf:X 17 16 0.6875 0.6471 0.6875 -8 3hk2:C, 3hk2:E, 8jpx:H, 8jpx:G, 4ncb:E
14 3w6v:C 16 16 0.5000 0.5000 0.5000 -8
15 4g7h:G 16 16 0.5000 0.5000 0.5000 -8 4g7h:Q, 4g7o:G, 4g7o:Q, 6l74:G, 4oin:G, 4oio:G, 4oip:G, 4oiq:G, 4oir:G
16 4g7z:G 16 16 0.4375 0.4375 0.4375 -8 4g7z:Q
17 4m3r:T 16 16 0.5000 0.5000 0.5000 -8
18 4m45:T 16 16 0.5000 0.5000 0.5000 -8
19 4qtr:G 16 16 0.5000 0.5000 0.5000 -8
20 6a57:B 16 16 0.5000 0.5000 0.5000 -8
21 6qzk:B 17 16 0.6875 0.6471 0.6875 -8
22 6wmi:C 17 16 0.6875 0.6471 0.6875 -8 6wmi:F
23 8ilw:B 16 16 0.5000 0.5000 0.5000 -8
24 2lev:B 15 15 0.6250 0.6667 0.6667 -10
25 6z8x:B 14 14 0.7500 0.8571 0.8571 -12
26 7kuf:C 18 16 0.6875 0.6111 0.6875 -12
27 1cit:B 16 16 0.4375 0.4375 0.4375 -13 7wnh:F, 7wnh:H, 7wnh:K, 7wnh:N
28 1lq1:E 16 16 0.4375 0.4375 0.4375 -13 1lq1:G
29 1yfh:D 16 16 0.4375 0.4375 0.4375 -13 1yfh:F
30 2d45:E 16 16 0.4375 0.4375 0.4375 -13 2d45:F, 1xsd:B
31 2is1:C 16 16 0.4375 0.4375 0.4375 -13
32 2kdz:B 16 16 0.4375 0.4375 0.4375 -13 3zqc:B, 3zqc:E, 3zqc:H, 3zqc:K
33 2qnf:E 16 16 0.4375 0.4375 0.4375 -13
34 3a01:C 17 16 0.6250 0.5882 0.6250 -13 3a01:G
35 3dpg:D 16 16 0.4375 0.4375 0.4375 -13
36 3f27:A 16 16 0.4375 0.4375 0.4375 -13 3u2b:A
37 3oqm:B 16 16 0.4375 0.4375 0.4375 -13
38 3oqn:B 16 16 0.4375 0.4375 0.4375 -13
39 3spz:T 16 16 0.4375 0.4375 0.4375 -13
40 4ati:D 16 16 0.4375 0.4375 0.4375 -13
41 4fbt:T 16 16 0.4375 0.4375 0.4375 -13
42 5e6a:C 16 16 0.4375 0.4375 0.4375 -13
43 5iud:E 16 16 0.4375 0.4375 0.4375 -13
44 6blw:B 16 16 0.4375 0.4375 0.4375 -13
45 6kqd:G 16 16 0.4375 0.4375 0.4375 -13 6kqd:Q
46 6n7t:T 16 16 0.4375 0.4375 0.4375 -13 6n7v:T, 8qqu:E, 6sko:I, 8u5y:D, 8u61:E, 1uaa:C, 6vaa:Z
47 6pqy:C 16 16 0.4375 0.4375 0.4375 -13 6pqy:F
48 6put:F 16 16 0.4375 0.4375 0.4375 -13
49 7vox:D 16 16 0.4375 0.4375 0.4375 -13 7vox:F
50 8iaz:C 16 16 0.4375 0.4375 0.4375 -13
51 8ipp:A 16 16 0.4375 0.4375 0.4375 -13
52 9bvd:G 16 16 0.4375 0.4375 0.4375 -13
53 1s40:B 11 11 0.6250 0.9091 0.9091 -14
54 1j5n:B 15 15 0.5625 0.6000 0.6000 -15
55 2h1k:D 15 15 0.5625 0.6000 0.6000 -15 2h1k:F
56 2jej:P 15 15 0.5625 0.6000 0.6000 -15
57 3jbx:F 15 15 0.5625 0.6000 0.6000 -15 3jbx:G
58 4a0a:C 15 15 0.5625 0.6000 0.6000 -15
59 4dih:D 15 15 0.5625 0.6000 0.6000 -15 4dii:D, 6eo6:D, 6eo7:D, 1hao:D, 1hap:D, 1hut:D, 3qlp:D, 6z8v:A, 6z8w:A, 7zkl:A, 7zkm:B, 7zkn:E
60 4qtr:E 15 15 0.5625 0.6000 0.6000 -15
61 5a0m:D 15 15 0.5625 0.6000 0.6000 -15 5a0m:H, 3c0w:C
62 5dqu:H 15 15 0.5625 0.6000 0.6000 -15 5dqu:I
63 6ryi:H 15 15 0.5625 0.6000 0.6000 -15
64 7ysf:B 15 15 0.5625 0.6000 0.6000 -15
65 9ant:D 15 15 0.5625 0.6000 0.6000 -15 9ant:F, 5jlw:C, 5jlw:F, 5jlx:C, 5jlx:F, 4xic:C, 4xic:F, 4xid:C, 4xid:F
66 2e2i:N 14 14 0.5625 0.6429 0.6429 -16 3gtj:N, 3gtk:N, 3gtl:N, 3gtm:O, 2nvq:N, 2nvx:N, 1r9t:N, 5w51:N, 4y52:N, 4y7n:N
67 5g32:D 14 14 0.5625 0.6429 0.6429 -16 5g32:F, 5g33:D, 5g33:F, 5g34:D, 5g34:F, 5g35:D, 5g35:F, 5lcl:D, 5lcm:D
68 8c56:C 14 14 0.5625 0.6429 0.6429 -16 8c57:C, 8c58:C, 8c59:C, 4dkj:C
69 8j54:B 18 16 0.6250 0.5556 0.6250 -17 8j54:P, 7xvn:P, 7xvn:F
70 8rm7:D 18 16 0.6250 0.5556 0.6250 -17
71 1ais:E 17 16 0.5625 0.5294 0.5625 -18
72 1cdw:B 16 16 0.3750 0.3750 0.3750 -18
73 1g4d:B 16 16 0.3750 0.3750 0.3750 -18
74 1l3v:C 16 16 0.3750 0.3750 0.3750 -18 3tar:C
75 1n4l:B 16 16 0.3750 0.3750 0.3750 -18
76 1nh2:F 16 16 0.3750 0.3750 0.3750 -18 1ytf:F
77 1oh6:F 16 16 0.3750 0.3750 0.3750 -18 2wtu:F
78 1vol:C 16 16 0.3750 0.3750 0.3750 -18
79 1w0u:C 16 16 0.3750 0.3750 0.3750 -18
80 1zvv:O 16 16 0.3750 0.3750 0.3750 -18 1zvv:T, 1zvv:R
81 2acj:F 17 16 0.5625 0.5294 0.5625 -18
82 2gzk:C 16 16 0.3750 0.3750 0.3750 -18
83 2rdj:D 16 16 0.3750 0.3750 0.3750 -18
84 2ve9:J 16 16 0.3750 0.3750 0.3750 -18 2ve9:L
85 2wt7:D 16 16 0.3750 0.3750 0.3750 -18
86 3co6:A 16 16 0.3750 0.3750 0.3750 -18
87 3coa:A 16 16 0.3750 0.3750 0.3750 -18 3coa:D
88 3g8u:C 16 16 0.3750 0.3750 0.3750 -18 3g8x:C, 3g97:D
89 3hov:T 17 16 0.5000 0.4706 0.5000 -18
90 3mfk:C 16 16 0.3750 0.3750 0.3750 -18
91 3oqm:E 16 16 0.3750 0.3750 0.3750 -18
92 3rnu:K 16 16 0.3750 0.3750 0.3750 -18
93 3veb:M 16 16 0.3750 0.3750 0.3750 -18
94 3veb:N 16 16 0.3750 0.3750 0.3750 -18
95 3w6v:B 16 16 0.3750 0.3750 0.3750 -18
96 4cn2:A 17 16 0.5625 0.5294 0.5625 -18
97 4du4:T 17 16 0.5625 0.5294 0.5625 -18
98 4e7j:T 16 16 0.3750 0.3750 0.3750 -18 3os1:T, 3os2:T
99 4fjk:T 16 16 0.3750 0.3750 0.3750 -18
100 4fjl:T 16 16 0.3750 0.3750 0.3750 -18 4fjn:T
101 4fzx:B 17 16 0.5625 0.5294 0.5625 -18
102 4l0y:D 16 16 0.3750 0.3750 0.3750 -18 4l0z:D, 4l18:D, 4l18:H, 3ri4:C, 3ri4:F, 6vg2:B, 6vg2:E, 6vg8:B, 6vgd:B, 6vge:B, 6vgg:B, 3wu1:D
103 4m3y:T 16 16 0.3750 0.3750 0.3750 -18
104 4qtk:D 17 16 0.5625 0.5294 0.5625 -18 4qtk:F
105 5e69:C 16 16 0.3750 0.3750 0.3750 -18
106 5vu9:T 16 16 0.3750 0.3750 0.3750 -18
107 5zmc:C 16 16 0.3750 0.3750 0.3750 -18
108 5zmc:D 16 16 0.3750 0.3750 0.3750 -18
109 6ako:B 16 16 0.3750 0.3750 0.3750 -18 7cby:A, 3co7:A, 3co7:D, 5x07:D, 5x07:A, 5x07:G, 5x07:J
110 6bqu:D 16 16 0.3750 0.3750 0.3750 -18 6bsf:D
111 6fbe:C 16 16 0.3750 0.3750 0.3750 -18
112 6l6y:A 16 16 0.3750 0.3750 0.3750 -18 6l6y:C
113 6me0:B 16 16 0.3750 0.3750 0.3750 -18
114 6nce:D 16 16 0.3750 0.3750 0.3750 -18
115 6py8:A 16 16 0.3750 0.3750 0.3750 -18 6py8:X
116 7d8t:C 16 16 0.3750 0.3750 0.3750 -18
117 7eyi:B 16 16 0.3750 0.3750 0.3750 -18
118 7l4v:C 16 16 0.3750 0.3750 0.3750 -18
119 7n5u:Y 16 16 0.3750 0.3750 0.3750 -18 7n5v:Y, 7n5v:I, 7n5v:E
120 7nx5:D 16 16 0.3750 0.3750 0.3750 -18
121 7ol9:C 16 16 0.3750 0.3750 0.3750 -18 7ol9:D
122 7oyk:EEE 16 16 0.3750 0.3750 0.3750 -18 7oyk:LLL, 7oyk:GGG
123 7oyk:FFF 16 16 0.3750 0.3750 0.3750 -18 7oyk:KKK, 7oyk:HHH
124 7tqq:C 16 16 0.3750 0.3750 0.3750 -18 7tqq:H
125 7vou:A 16 16 0.3750 0.3750 0.3750 -18
126 7yq8:D 16 16 0.3750 0.3750 0.3750 -18
127 8e3r:C 16 16 0.3750 0.3750 0.3750 -18 8ej8:C
128 8ee9:C 16 16 0.3750 0.3750 0.3750 -18
129 8ek8:C 16 16 0.3750 0.3750 0.3750 -18
130 8j9w:D 17 16 0.5625 0.5294 0.5625 -18 8j9w:F
131 8vdh:C 16 16 0.3750 0.3750 0.3750 -18
132 8gn3:C 11 11 0.5625 0.8182 0.8182 -19 8gn3:E
133 1nk2:A 16 15 0.6875 0.6875 0.7333 -20 1nk3:A
134 1pdn:B 15 15 0.5000 0.5333 0.5333 -20
135 2ief:D 15 15 0.5000 0.5333 0.5333 -20
136 2nbj:C 15 15 0.5000 0.5333 0.5333 -20
137 3hm9:X 16 15 0.6875 0.6875 0.7333 -20 3hvr:C, 3hvr:M, 4kpy:C, 4kpy:E, 4n41:E, 4nca:C, 4nca:E, 4ncb:C
138 3p57:F 15 15 0.5000 0.5333 0.5333 -20 3p57:L
139 3qz8:T 15 15 0.5000 0.5333 0.5333 -20
140 3vok:U 15 15 0.5000 0.5333 0.5333 -20
141 4fm0:T 15 15 0.4375 0.4667 0.4667 -20 4fm2:T
142 5ew1:E 15 15 0.5000 0.5333 0.5333 -20 4lz4:E, 4lz4:F
143 5ew2:E 15 15 0.5000 0.5333 0.5333 -20 4lz1:D
144 5gke:D 15 15 0.5000 0.5333 0.5333 -20 5gkg:D
145 5gq9:C 16 15 0.6875 0.6875 0.7333 -20 5gq9:E
146 6p1h:T 15 15 0.5000 0.5333 0.5333 -20
147 6wfq:A 15 15 0.5000 0.5333 0.5333 -20
148 7mtl:D 15 15 0.5000 0.5333 0.5333 -20
149 7xi4:C 15 15 0.5000 0.5333 0.5333 -20
150 8hig:C 20 16 0.6875 0.5500 0.6875 -20 8hml:C
151 8jsi:G 16 15 0.6875 0.6875 0.7333 -20 8jsi:H, 8wd8:G, 8wd8:H
152 1nk5:C 14 14 0.5000 0.5714 0.5714 -21
153 1qn6:C 14 14 0.5000 0.5714 0.5714 -21 1qn6:E
154 1qna:C 14 14 0.5000 0.5714 0.5714 -21 1qna:E
155 2ago:B 14 14 0.5000 0.5714 0.5714 -21 2xc9:P
156 3bep:D 14 14 0.5000 0.5714 0.5714 -21
157 3gna:E 14 14 0.5000 0.5714 0.5714 -21
158 3lnq:B 14 14 0.5000 0.5714 0.5714 -21
159 3s8q:C 19 16 0.6250 0.5263 0.6250 -21
160 4bac:C 19 16 0.6250 0.5263 0.6250 -21 3l2q:C, 3l2r:C, 3l2u:C, 3l2v:C, 3l2w:C
161 4f6n:D 19 16 0.6250 0.5263 0.6250 -21
162 4j19:C 19 16 0.6250 0.5263 0.6250 -21 1w0t:C
163 5zu1:F 14 14 0.5000 0.5714 0.5714 -21
164 6erf:I 14 14 0.5000 0.5714 0.5714 -21 6erf:O
165 6rqt:U 14 14 0.5000 0.5714 0.5714 -21
166 6ukg:A 14 14 0.5000 0.5714 0.5714 -21 6uki:A, 6uki:D
167 7n5t:X 14 14 0.5000 0.5714 0.5714 -21
168 8eml:F 14 14 0.5000 0.5714 0.5714 -21 8eml:D
169 8u8l:D 19 16 0.6250 0.5263 0.6250 -21
170 1ahd:B 14 14 0.6250 0.7143 0.7143 -22
171 1iv6:B 13 13 0.5000 0.6154 0.6154 -22 1vfc:B
172 1ph1:G 13 13 0.5000 0.6154 0.6154 -22 1ph1:D
173 1r4i:D 18 16 0.5625 0.5000 0.5625 -22
174 3dvo:E 18 16 0.5625 0.5000 0.5625 -22 3dvo:F, 3dvo:G, 3dvo:H, 3dw9:E, 3dw9:F
175 4enj:B 13 13 0.5000 0.6154 0.6154 -22 4enk:B, 4enn:C, 4enn:D, 4enn:E, 4enn:F, 3gx4:Y, 3gyh:Y, 4hdu:B, 1t38:B, 4wx9:D
176 4gat:C 13 13 0.5000 0.6154 0.6154 -22 5gat:C
177 4rzr:E 18 16 0.5625 0.5000 0.5625 -22
178 5nnx:F 18 16 0.5625 0.5000 0.5625 -22
179 5zfz:E 19 16 0.7500 0.6316 0.7500 -22
180 5zux:B 18 16 0.5625 0.5000 0.5625 -22 5zux:C
181 6b0q:E 13 13 0.5000 0.6154 0.6154 -22 6b0q:B
182 6lct:D 18 16 0.5625 0.5000 0.5625 -22
183 6ldm:B 18 16 0.5625 0.5000 0.5625 -22
184 6rks:G 18 16 0.5625 0.5000 0.5625 -22 6rks:H, 6rku:G, 6rku:H, 6rkv:G, 6rkv:H
185 6ukh:A 13 13 0.5000 0.6154 0.6154 -22
186 7cuh:B 18 16 0.5625 0.5000 0.5625 -22
187 7jkp:D 13 13 0.5000 0.6154 0.6154 -22
188 7o0h:F 13 13 0.5000 0.6154 0.6154 -22
189 7z6o:C 13 13 0.5000 0.6154 0.6154 -22
190 8ac2:N 18 16 0.5625 0.5000 0.5625 -22
191 8g1s:A 18 16 0.5625 0.5000 0.5625 -22
192 8sro:I 18 16 0.5625 0.5000 0.5625 -22 8sro:E
193 1cit:C 16 16 0.3125 0.3125 0.3125 -23 7wnh:E, 7wnh:I, 7wnh:L, 7wnh:O
194 1dct:N 17 16 0.5000 0.4706 0.5000 -23
195 1dp7:D 16 16 0.3125 0.3125 0.3125 -23
196 1g2d:A 16 16 0.3125 0.3125 0.3125 -23 1g2d:D, 1g2f:A, 1g2f:D
197 1g4d:C 16 16 0.3125 0.3125 0.3125 -23
198 1iaw:C 16 16 0.3125 0.3125 0.3125 -23
199 1ig7:C 16 16 0.3125 0.3125 0.3125 -23
200 1jb7:D 12 12 0.5000 0.6667 0.6667 -23 1jb7:G, 1otc:D, 1pa6:G, 1ph2:G, 1ph3:G, 1ph4:G, 1ph5:G, 1ph6:G, 1ph7:G, 1ph8:G, 1ph9:G, 1phj:G
201 1n4l:D 16 16 0.3125 0.3125 0.3125 -23
202 1ouq:C 16 16 0.2500 0.2500 0.2500 -23 1ouq:G, 1q3v:C, 1q3v:G
203 1ph3:D 12 12 0.5000 0.6667 0.6667 -23
204 1qp0:M 17 16 0.5000 0.4706 0.5000 -23 1qp7:M
205 1qp4:M 17 16 0.5000 0.4706 0.5000 -23 1qqb:M
206 1r71:E 17 16 0.4375 0.4118 0.4375 -23 1r71:J, 1r71:G, 1r71:K
207 1tqe:D 17 16 0.5000 0.4706 0.5000 -23 1tqe:F
208 1trr:C 16 16 0.3125 0.3125 0.3125 -23 1trr:F, 1trr:I, 1trr:L
209 2aq4:T 16 16 0.3125 0.3125 0.3125 -23 3bjy:T, 3gqc:F, 3gqc:H, 3gqc:J, 3gqc:L, 3iay:T
210 2bnz:E 17 16 0.5000 0.4706 0.5000 -23
211 2euv:C 12 12 0.5000 0.6667 0.6667 -23
212 2fvq:B 16 16 0.3125 0.3125 0.3125 -23
213 2fvr:B 16 16 0.3125 0.3125 0.3125 -23
214 2fvs:B 16 16 0.3125 0.3125 0.3125 -23
215 2hdc:C 17 16 0.5000 0.4706 0.5000 -23
216 2i9t:C 17 16 0.5000 0.4706 0.5000 -23
217 2ivk:I 16 16 0.3125 0.3125 0.3125 -23 2ivk:J
218 2kdz:C 16 16 0.3125 0.3125 0.3125 -23 3zqc:C, 3zqc:F, 3zqc:I, 3zqc:L
219 2ql2:E 16 16 0.3125 0.3125 0.3125 -23 2ql2:G
220 3bsu:E 12 12 0.4375 0.5833 0.5833 -23 3bsu:J
221 3dlh:X 17 16 0.5000 0.4706 0.5000 -23
222 3ere:A 16 16 0.3125 0.3125 0.3125 -23 3laj:G, 3laj:I, 3laj:K, 3lap:G, 3lap:I, 3lap:K
223 3fyl:C 16 16 0.3125 0.3125 0.3125 -23 3g9m:C, 3g9o:D, 3g9p:D
224 3g6q:C 16 16 0.3125 0.3125 0.3125 -23 3g6u:D
225 3g6t:C 16 16 0.3125 0.3125 0.3125 -23
226 3gpy:B 16 16 0.3125 0.3125 0.3125 -23
227 3igc:D 16 16 0.3125 0.3125 0.3125 -23
228 3jtg:B 16 16 0.3125 0.3125 0.3125 -23
229 3l8b:C 16 16 0.3125 0.3125 0.3125 -23 3l8b:E
230 3mfk:D 16 16 0.3125 0.3125 0.3125 -23
231 3oqn:E 16 16 0.3125 0.3125 0.3125 -23
232 3oqo:B 16 16 0.3125 0.3125 0.3125 -23 1rzr:H, 1rzr:E
233 3osp:T 16 16 0.3125 0.3125 0.3125 -23
234 3rnu:L 16 16 0.3125 0.3125 0.3125 -23
235 4cn7:D 16 16 0.3125 0.3125 0.3125 -23 4cn7:H, 3oa6:D, 3oa6:F
236 4df8:C 16 16 0.3125 0.3125 0.3125 -23 5szt:C, 5yte:C
237 4dtn:T 17 16 0.5000 0.4706 0.5000 -23 4dto:T, 4dtp:T
238 4e0p:D 16 16 0.3125 0.3125 0.3125 -23 4e0y:D, 4e0z:D
239 4fj8:T 17 16 0.5000 0.4706 0.5000 -23
240 4fk0:T 17 16 0.5000 0.4706 0.5000 -23
241 4fk2:T 17 16 0.5000 0.4706 0.5000 -23 4fk4:T
242 4hht:C 12 12 0.5000 0.6667 0.6667 -23 3o3f:C, 3o3g:C, 3o3h:C, 5vaj:D, 1zbi:D, 1zbl:D
243 4m41:T 17 16 0.5000 0.4706 0.5000 -23
244 4o3m:T 16 16 0.3125 0.3125 0.3125 -23
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1000 4flv:T 13 13 0.3750 0.4615 0.4615 -32 4flx:T

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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