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BioLiP
>dna
ggtttttgtctggcttcacacttgatttgcatcactgtgcgccgcaggccagatccagg

The query sequence (length=59) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6oet:G 59 59 1.0000 1.0000 1.0000 5.05e-27
2 6cg0:G 60 58 0.8983 0.8833 0.9138 3.96e-18 6cij:G
3 6oem:J 57 55 0.8475 0.8772 0.9091 1.84e-16 6oen:J, 6oeo:J, 6oep:J, 6oeq:J, 6oer:J
4 6oem:G 57 55 0.8475 0.8772 0.9091 1.84e-16 6oen:G, 6oeo:G, 6oep:G, 6oeq:G
5 5ze2:M 40 39 0.6610 0.9750 1.0000 6.63e-16
6 5ze2:G 40 39 0.6610 0.9750 1.0000 6.63e-16
7 5zdz:G 54 39 0.6610 0.7222 1.0000 6.63e-16 5ze0:G, 5ze1:G
8 6cim:J 52 39 0.6610 0.7500 1.0000 6.63e-16
9 6cim:G 52 39 0.6610 0.7500 1.0000 6.63e-16
10 6cil:J 53 39 0.6610 0.7358 1.0000 6.63e-16
11 6cil:G 53 39 0.6610 0.7358 1.0000 6.63e-16
12 6cik:M 39 39 0.6610 1.0000 1.0000 6.63e-16 6oet:M, 5zdz:M, 5ze0:M, 5ze1:M
13 6cik:G 51 39 0.6610 0.7647 1.0000 6.63e-16
14 6cg0:M 41 39 0.6610 0.9512 1.0000 6.63e-16 6cij:M
15 6oer:G 57 38 0.6441 0.6667 1.0000 2.38e-15
16 6oes:G 34 34 0.5763 1.0000 1.0000 3.99e-13

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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