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BioLiP
>dna
ggtcagaaaatcggttgtggtcagctgctgccaccggttaacctccaattctgctgccagcct

The query sequence (length=63) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kif:O 63 63 1.0000 1.0000 1.0000 3.29e-29
2 7kin:O 54 55 0.8571 1.0000 0.9818 1.54e-22
3 7kim:P 45 45 0.7143 1.0000 1.0000 3.34e-19
4 7kim:O 45 45 0.7143 1.0000 1.0000 3.34e-19
5 7kif:P 55 40 0.6349 0.7273 1.0000 2.01e-16
6 7kin:P 49 55 0.7778 1.0000 0.8909 4.35e-13

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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