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BioLiP
>dna
gatctggcctgtcttacacagtgctacagactggaacaaaaaccctgcag

The query sequence (length=50) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6dbl:E 50 50 1.0000 1.0000 1.0000 4.05e-22 6dbq:E, 6dbt:E, 6dbv:E, 6dbw:E, 6dbx:E
2 6dbi:F 50 50 1.0000 1.0000 1.0000 4.05e-22 6dbl:F, 6dbq:F, 6dbt:F, 6dbv:F, 6dbw:F, 6dbx:F, 3jbw:F
3 6dbr:F 34 34 0.6800 1.0000 1.0000 3.17e-13 6dbu:F, 6dbu:H
4 6dbr:E 34 34 0.6800 1.0000 1.0000 3.17e-13 6dbu:E, 6dbu:G
5 6dbi:E 34 34 0.6800 1.0000 1.0000 3.17e-13 3jbw:E
6 6dbj:F 31 31 0.6200 1.0000 1.0000 1.48e-11 6dbj:G, 3jby:F, 3jby:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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