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BioLiP
>dna
gacaaaaaacgtcccg

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 7oyk:EEE 16 16 1.0000 1.0000 1.0000 32 7oyk:LLL, 7oyk:GGG
2 1vol:C 16 16 0.5625 0.5625 0.5625 -3
3 3mfk:D 16 16 0.5625 0.5625 0.5625 -3
4 6isg:D 16 16 0.5625 0.5625 0.5625 -3
5 8cxs:D 14 14 0.6875 0.7857 0.7857 -6 8cxs:F, 8cxs:H, 8cxt:D, 8cxt:F, 8cxt:H, 8cxu:D, 8cxu:F, 8cxu:H, 8cxv:D, 8cxv:F, 8cxv:H, 8cxw:D, 8cxw:F, 8cxw:H, 8cxx:D, 8cxx:F, 8cxx:H, 8cxy:D, 8cxy:F, 8cxy:H, 8cxz:D, 8cxz:F, 8cxz:H, 8cy0:D, 8cy0:F, 8cy0:H, 8cy1:D, 8cy1:F, 8cy1:H, 8cy2:D, 8cy2:F, 8cy2:H, 8cy3:D, 8cy3:F, 8cy3:H, 8cy4:D, 8cy4:F, 8cy4:H, 8cy5:D, 8cy5:F, 8cy5:H, 8fs1:D, 8fs1:F, 8fs1:H, 8fs2:D, 8fs2:F, 8fs2:H, 7lni:D, 7lni:F, 7lni:H, 7lnj:D, 7lnj:F, 7lnj:H, 7lt5:D, 7lt5:F, 7lt5:H, 7rfk:D, 7rfk:F, 7rfk:H, 7rfl:D, 7rfl:F, 7rfl:H, 7rfm:D, 7rfm:F, 7rfm:H, 7rfn:D, 7rfn:F, 7rfn:H, 8vpg:D, 8vpg:F, 8vpg:H, 8vph:D, 8vph:F, 8vph:H, 8vpi:D, 8vpi:F, 8vpi:H
6 2fvs:B 16 16 0.5000 0.5000 0.5000 -8
7 2kmk:B 16 16 0.5000 0.5000 0.5000 -8
8 2qnf:C 16 16 0.5000 0.5000 0.5000 -8
9 3coa:B 16 16 0.5000 0.5000 0.5000 -8 3coa:E
10 3spz:T 16 16 0.5000 0.5000 0.5000 -8
11 3veb:M 16 16 0.5000 0.5000 0.5000 -8
12 4ati:C 16 16 0.5000 0.5000 0.5000 -8
13 4f4y:C 16 16 0.5000 0.5000 0.5000 -8 4f4y:P
14 4gc7:F 16 16 0.5000 0.5000 0.5000 -8
15 4osj:H 16 16 0.5000 0.5000 0.5000 -8 4osr:H, 4ost:H, 4ot0:H, 4ot3:H
16 4oss:H 16 16 0.5000 0.5000 0.5000 -8
17 5e6a:D 16 16 0.5000 0.5000 0.5000 -8
18 7d8t:D 16 16 0.5000 0.5000 0.5000 -8
19 1l3v:C 16 16 0.4375 0.4375 0.4375 -13 3tar:C
20 1zvv:O 16 16 0.4375 0.4375 0.4375 -13 1zvv:T, 1zvv:R
21 2d45:E 16 16 0.4375 0.4375 0.4375 -13 2d45:F, 1xsd:B
22 3co6:B 16 16 0.4375 0.4375 0.4375 -13
23 3fyl:C 16 16 0.4375 0.4375 0.4375 -13 3g9m:C, 3g9o:D, 3g9p:D
24 3g99:D 16 16 0.4375 0.4375 0.4375 -13 3g9i:D
25 3l8b:C 16 16 0.4375 0.4375 0.4375 -13 3l8b:E
26 3rma:I 17 16 0.6250 0.5882 0.6250 -13
27 3rnu:K 16 16 0.4375 0.4375 0.4375 -13
28 3veb:N 16 16 0.4375 0.4375 0.4375 -13
29 4dtn:T 17 16 0.6250 0.5882 0.6250 -13 4dto:T, 4dtp:T
30 4fji:T 17 16 0.6250 0.5882 0.6250 -13 3qno:T
31 4fjk:T 16 16 0.4375 0.4375 0.4375 -13
32 4fjl:T 16 16 0.4375 0.4375 0.4375 -13 4fjn:T
33 4j1j:H 17 16 0.6250 0.5882 0.6250 -13 4j1j:I
34 4m45:T 16 16 0.4375 0.4375 0.4375 -13
35 4s2q:B 16 16 0.4375 0.4375 0.4375 -13
36 5cnq:R 16 16 0.4375 0.4375 0.4375 -13 6grb:R, 6grc:R, 6grd:R
37 5e69:C 16 16 0.4375 0.4375 0.4375 -13
38 5jub:X 17 16 0.6250 0.5882 0.6250 -13
39 5zmc:D 16 16 0.4375 0.4375 0.4375 -13
40 6bse:C 16 16 0.4375 0.4375 0.4375 -13
41 6dww:B 16 16 0.4375 0.4375 0.4375 -13 6dwy:B, 6dx0:B
42 6l6y:A 16 16 0.4375 0.4375 0.4375 -13 6l6y:C
43 6nku:T 16 16 0.4375 0.4375 0.4375 -13 6nkv:T, 6nkw:T, 6nkx:T, 6nky:T, 6nkz:T, 6nl0:T
44 6put:F 16 16 0.4375 0.4375 0.4375 -13
45 6xwh:A 16 16 0.4375 0.4375 0.4375 -13
46 7d3t:F 16 16 0.4375 0.4375 0.4375 -13 7d3t:H
47 7d8t:C 16 16 0.4375 0.4375 0.4375 -13
48 7eyi:B 16 16 0.4375 0.4375 0.4375 -13
49 7n5v:X 16 16 0.4375 0.4375 0.4375 -13 7n5v:H, 7n5v:D
50 7y3k:H 16 16 0.4375 0.4375 0.4375 -13 7y3m:H, 7y3m:E, 7y3m:L
51 7yzg:C 16 16 0.4375 0.4375 0.4375 -13
52 7zus:DDD 16 16 0.4375 0.4375 0.4375 -13 7zus:FFF, 7zus:HHH, 7zx0:GGG, 7zx0:III, 7zx0:KKK, 7zx0:MMM, 7zx0:OOO, 7zx0:QQQ, 7zx1:GGG, 7zx1:III, 7zx1:KKK, 7zx1:MMM, 7zx1:OOO, 7zx1:QQQ
53 8cyf:D 16 16 0.4375 0.4375 0.4375 -13
54 8ee9:C 16 16 0.4375 0.4375 0.4375 -13
55 8ek8:C 16 16 0.4375 0.4375 0.4375 -13
56 8em9:C 16 16 0.4375 0.4375 0.4375 -13
57 9cex:A 16 16 0.4375 0.4375 0.4375 -13 8oz6:J, 8oz6:L, 8oz6:O, 8oz6:P, 8ozd:J, 8ozd:E, 8ozf:J, 8ozf:L, 8ozf:P, 8ozf:Q, 8ozg:J, 8ozg:L, 8ozg:P, 8ozg:Q, 8ozi:J, 8ozi:L, 8ozi:O, 8ozi:P, 8qqu:F
58 2ht0:E 15 15 0.5625 0.6000 0.6000 -15 1ihf:D, 2iie:D, 2iif:D, 1ouz:D, 1owf:D, 1owg:D
59 2mru:Y 15 15 0.5625 0.6000 0.6000 -15
60 2nbj:B 15 15 0.5625 0.6000 0.6000 -15
61 2w7o:F 15 15 0.5625 0.6000 0.6000 -15 2w7p:F
62 6dwz:B 15 15 0.5625 0.6000 0.6000 -15 6dwz:F
63 2oeh:B 15 14 0.7500 0.8000 0.8571 -16
64 2xzf:C 14 14 0.5625 0.6429 0.6429 -16
65 5zjq:C 14 14 0.5625 0.6429 0.6429 -16
66 6ueq:C 14 14 0.5625 0.6429 0.6429 -16
67 1kfv:E 13 13 0.5625 0.6923 0.6923 -17 1kfv:H
68 2nll:D 18 16 0.6250 0.5556 0.6250 -17
69 7kuf:D 18 16 0.6250 0.5556 0.6250 -17
70 1cit:B 16 16 0.3750 0.3750 0.3750 -18 7wnh:F, 7wnh:H, 7wnh:K, 7wnh:N
71 1cit:C 16 16 0.3750 0.3750 0.3750 -18 7wnh:E, 7wnh:I, 7wnh:L, 7wnh:O
72 1dp7:D 16 16 0.3750 0.3750 0.3750 -18
73 1g2d:A 16 16 0.3750 0.3750 0.3750 -18 1g2d:D, 1g2f:A, 1g2f:D
74 1hjc:B 16 16 0.3750 0.3750 0.3750 -18 1hjc:E
75 1jh9:B 17 16 0.5625 0.5294 0.5625 -18 1pnr:B, 1wet:B
76 1n48:C 16 16 0.3750 0.3750 0.3750 -18 2va3:T
77 1oh6:E 16 16 0.3750 0.3750 0.3750 -18 2wtu:E
78 1zay:M 17 16 0.5625 0.5294 0.5625 -18
79 2br0:T 17 16 0.5625 0.5294 0.5625 -18 2c22:T, 2c28:T, 2j6u:T, 3t5h:B, 3t5l:B, 2uvr:T, 2uvu:T, 2uvw:T, 2v4q:T, 2v4r:T, 2w7o:T, 2w7p:T, 2xc9:T, 2xca:T
80 2e1c:D 17 16 0.5625 0.5294 0.5625 -18
81 2ia6:F 16 16 0.3750 0.3750 0.3750 -18
82 2jef:T 16 16 0.3750 0.3750 0.3750 -18 2jei:T
83 2jeg:T 17 16 0.5625 0.5294 0.5625 -18
84 2oyq:E 16 16 0.3750 0.3750 0.3750 -18
85 2ql2:F 16 16 0.3750 0.3750 0.3750 -18 2ql2:H
86 2qnf:F 16 16 0.3750 0.3750 0.3750 -18
87 3g6q:D 16 16 0.3750 0.3750 0.3750 -18 3g6u:C
88 3g6t:D 16 16 0.3750 0.3750 0.3750 -18
89 3g8u:C 16 16 0.3750 0.3750 0.3750 -18 3g8x:C, 3g97:D
90 3igc:D 16 16 0.3750 0.3750 0.3750 -18
91 3jtg:C 16 16 0.3750 0.3750 0.3750 -18
92 3l2q:D 17 16 0.5625 0.5294 0.5625 -18 3l2r:D, 3l2u:D, 3l2v:D, 3l2w:D
93 3mfk:C 16 16 0.3750 0.3750 0.3750 -18
94 3oqm:B 16 16 0.3750 0.3750 0.3750 -18
95 3oqo:B 16 16 0.3750 0.3750 0.3750 -18 1rzr:H, 1rzr:E
96 3v6h:C 17 16 0.5625 0.5294 0.5625 -18
97 4dfm:B 12 12 0.5625 0.7500 0.7500 -18 4elu:B, 5o7t:B, 5oxj:B, 1qss:B, 3rr8:B, 3rrg:B, 3rtv:B, 3sz2:B
98 4e3s:T 17 16 0.5625 0.5294 0.5625 -18
99 4fjg:T 17 16 0.5625 0.5294 0.5625 -18
100 4fk2:T 17 16 0.5625 0.5294 0.5625 -18 4fk4:T
101 4gjp:H 16 16 0.3750 0.3750 0.3750 -18 6lew:J, 6lew:D
102 4k8x:T 16 16 0.3750 0.3750 0.3750 -18
103 4m3r:T 16 16 0.3750 0.3750 0.3750 -18
104 4m3y:T 16 16 0.3750 0.3750 0.3750 -18
105 4osi:I 16 16 0.3750 0.3750 0.3750 -18 4osj:I
106 4qtr:F 16 16 0.3750 0.3750 0.3750 -18 4qtr:H
107 4tnt:C 17 16 0.5625 0.5294 0.5625 -18
108 4tnt:D 17 16 0.5625 0.5294 0.5625 -18
109 4tup:T 16 16 0.3750 0.3750 0.3750 -18 4tuq:T, 4tur:T, 4tus:T, 6u2o:T, 6u6b:T
110 5e69:D 16 16 0.3750 0.3750 0.3750 -18
111 5e6d:C 16 16 0.3750 0.3750 0.3750 -18
112 5fmp:D 16 16 0.3750 0.3750 0.3750 -18
113 5j0o:T 16 16 0.3750 0.3750 0.3750 -18 5j0p:T, 5j0q:T, 5j29:T, 5j2a:T, 5j2b:T
114 5vu9:T 16 16 0.3750 0.3750 0.3750 -18
115 6a57:C 16 16 0.3750 0.3750 0.3750 -18
116 6bqu:C 16 16 0.3750 0.3750 0.3750 -18 6bsf:C
117 6fbq:D 17 16 0.5625 0.5294 0.5625 -18 6fbr:D
118 6ish:D 16 16 0.3750 0.3750 0.3750 -18
119 6khy:F 16 16 0.3750 0.3750 0.3750 -18
120 6kqd:G 16 16 0.3750 0.3750 0.3750 -18 6kqd:Q
121 6ryl:F 16 16 0.3750 0.3750 0.3750 -18 6ryl:H
122 6ryl:G 16 16 0.3750 0.3750 0.3750 -18 6ryl:I
123 6vg2:C 16 16 0.3750 0.3750 0.3750 -18 6vg2:F, 6vg8:C, 6vgd:C, 6vge:C, 6vgg:C
124 6vnp:T 17 16 0.5625 0.5294 0.5625 -18 6vnp:F, 6vnp:I
125 7aeo:C 16 16 0.3750 0.3750 0.3750 -18
126 7d3t:E 16 16 0.3750 0.3750 0.3750 -18 7d3t:G
127 7mr4:A 16 16 0.3750 0.3750 0.3750 -18
128 7n5u:X 16 16 0.3750 0.3750 0.3750 -18
129 7n5w:X 16 16 0.3750 0.3750 0.3750 -18
130 7owf:C 16 16 0.3750 0.3750 0.3750 -18
131 7pla:C 17 16 0.5625 0.5294 0.5625 -18
132 7x5f:D 16 16 0.3750 0.3750 0.3750 -18 7x5f:H, 7x5g:D, 7x5g:H
133 8dh1:A 16 16 0.3750 0.3750 0.3750 -18 8dh3:A, 8dh3:J, 8dh5:A, 8dh5:J
134 8e3r:C 16 16 0.3750 0.3750 0.3750 -18 8ej8:C
135 8ej6:C 16 16 0.3750 0.3750 0.3750 -18
136 8eku:C 16 16 0.3750 0.3750 0.3750 -18
137 8t7s:D 17 15 0.7500 0.7059 0.8000 -19
138 1by4:E 15 15 0.5000 0.5333 0.5333 -20
139 1dsz:C 15 15 0.5000 0.5333 0.5333 -20
140 1j5n:C 15 15 0.5000 0.5333 0.5333 -20
141 1lq1:F 16 15 0.6875 0.6875 0.7333 -20 1lq1:H
142 1zrf:W 15 15 0.5000 0.5333 0.5333 -20
143 2rdj:F 15 15 0.5000 0.5333 0.5333 -20
144 3tae:K 15 15 0.5000 0.5333 0.5333 -20 3tag:K
145 4gc7:D 15 15 0.5000 0.5333 0.5333 -20
146 4osh:H 15 15 0.5000 0.5333 0.5333 -20
147 6isg:C 15 15 0.5000 0.5333 0.5333 -20
148 6k2j:E 15 15 0.5000 0.5333 0.5333 -20
149 6sa0:C 15 15 0.5000 0.5333 0.5333 -20 6sa0:F, 6sa1:F
150 7o0h:E 15 15 0.5000 0.5333 0.5333 -20
151 1qn4:C 14 14 0.5000 0.5714 0.5714 -21 1qn4:E
152 1qn9:C 14 14 0.5000 0.5714 0.5714 -21 1qn9:E
153 1qnc:C 14 14 0.5000 0.5714 0.5714 -21 1qnc:E
154 1qne:C 14 14 0.5000 0.5714 0.5714 -21 1qne:E, 6ueo:B, 6ueo:E, 6ueo:H, 6ueo:K, 1vtl:A, 1vtl:C, 1vto:C, 1vto:E
155 3foe:H 19 16 0.6250 0.5263 0.6250 -21 3fof:H
156 3rma:E 14 14 0.5000 0.5714 0.5714 -21 3rmc:K
157 4h8k:D 14 14 0.5000 0.5714 0.5714 -21 2qkk:D, 2qkk:H, 2qkk:L, 2qkk:P, 2qkk:U
158 4n41:F 14 14 0.5000 0.5714 0.5714 -21
159 5zjr:C 14 14 0.5000 0.5714 0.5714 -21
160 5zjs:C 14 14 0.5000 0.5714 0.5714 -21
161 6fn0:D 14 14 0.5000 0.5714 0.5714 -21
162 6iid:J 9 9 0.5625 1.0000 1.0000 -21
163 6rks:F 14 14 0.5000 0.5714 0.5714 -21 6rks:E, 6rku:F, 6rku:E, 6rkv:F, 6rkv:E
164 1bnk:D 13 13 0.5000 0.6154 0.6154 -22 1f6o:D, 3qi5:C, 3qi5:E
165 1cgp:D 13 13 0.5000 0.6154 0.6154 -22 1cgp:F
166 1diz:C 13 13 0.5000 0.6154 0.6154 -22 1diz:E
167 1lo1:B 13 13 0.5000 0.6154 0.6154 -22
168 1s0n:P 13 13 0.5000 0.6154 0.6154 -22
169 1sxq:E 13 13 0.5000 0.6154 0.6154 -22 1sxq:F
170 2p5l:A 18 16 0.5625 0.5000 0.5625 -22 2p5l:E
171 3g9j:C 18 16 0.5625 0.5000 0.5625 -22
172 5gnj:O 13 13 0.5000 0.6154 0.6154 -22
173 5y7g:N 13 13 0.5000 0.6154 0.6154 -22
174 6p0e:D 18 16 0.5625 0.5000 0.5625 -22
175 7b0h:A 13 13 0.5000 0.6154 0.6154 -22 7b0h:C
176 7dcj:C 13 13 0.5000 0.6154 0.6154 -22
177 7edb:E 13 13 0.5000 0.6154 0.6154 -22
178 7wnr:D 18 16 0.5625 0.5000 0.5625 -22
179 1bdh:B 17 16 0.5000 0.4706 0.5000 -23 1bdi:B, 1jfs:B, 1jft:B, 2pua:B, 2pub:B, 2puc:B, 2pud:B, 2pue:B, 2puf:B, 2pug:B, 1qpz:M, 1vpw:B
180 1bpz:T 16 16 0.3125 0.3125 0.3125 -23 1zjm:T, 1zjn:T
181 1by4:G 16 16 0.3125 0.3125 0.3125 -23 4cn7:C, 4cn7:G
182 1c7y:G 12 12 0.5000 0.6667 0.6667 -23
183 1cdw:B 16 16 0.3125 0.3125 0.3125 -23
184 1d2i:C 16 16 0.3125 0.3125 0.3125 -23 1d2i:D, 1dfm:C, 1dfm:D
185 1lei:C 17 16 0.5000 0.4706 0.5000 -23
186 1n4l:B 16 16 0.3125 0.3125 0.3125 -23
187 1ouq:C 16 16 0.3125 0.3125 0.3125 -23 1ouq:G, 1q3v:C, 1q3v:G
188 1qp0:M 17 16 0.5000 0.4706 0.5000 -23 1qp7:M
189 1qtm:B 12 12 0.5000 0.6667 0.6667 -23 3rrh:B
190 1ryr:C 16 16 0.3125 0.3125 0.3125 -23
191 1s0m:D 16 16 0.3125 0.3125 0.3125 -23 1s0m:F
192 1tk0:T 16 16 0.3125 0.3125 0.3125 -23
193 1trr:C 16 16 0.3125 0.3125 0.3125 -23 1trr:F, 1trr:I, 1trr:L
194 1vkx:D 12 12 0.5000 0.6667 0.6667 -23
195 1yfh:E 16 16 0.3125 0.3125 0.3125 -23 1yfh:G
196 1zrf:Y 16 16 0.3125 0.3125 0.3125 -23
197 2bq3:T 17 16 0.5000 0.4706 0.5000 -23 2bqr:T, 2bqu:T, 2j6t:T, 4rua:T, 3t5j:B, 3t5k:B
198 2c2r:T 16 16 0.3125 0.3125 0.3125 -23 2uvv:T, 2w8k:T, 2w8l:T, 2w9a:T, 2w9c:E, 2w9c:F
199 2c6y:C 16 16 0.3125 0.3125 0.3125 -23
200 2c7a:D 18 16 0.6875 0.6111 0.6875 -23
201 2e1c:B 17 16 0.5000 0.4706 0.5000 -23
202 2e42:D 16 16 0.3125 0.3125 0.3125 -23 2e43:D, 1gu4:D
203 2ivk:I 16 16 0.3125 0.3125 0.3125 -23 2ivk:J
204 2jp9:C 17 16 0.5000 0.4706 0.5000 -23
205 2ntz:W 16 16 0.3125 0.3125 0.3125 -23 2ntz:U
206 2o8f:E 17 16 0.5000 0.4706 0.5000 -23
207 2ql2:E 16 16 0.3125 0.3125 0.3125 -23 2ql2:G
208 2qnf:D 16 16 0.3125 0.3125 0.3125 -23
209 2rdj:D 16 16 0.3125 0.3125 0.3125 -23
210 2v9w:F 16 16 0.3125 0.3125 0.3125 -23 2va2:D
211 3a01:C 17 16 0.5000 0.4706 0.5000 -23 3a01:G
212 3bs1:C 16 16 0.3125 0.3125 0.3125 -23
213 3ere:A 16 16 0.3125 0.3125 0.3125 -23 3laj:G, 3laj:I, 3laj:K, 3lap:G, 3lap:I, 3lap:K
214 3f27:A 16 16 0.3125 0.3125 0.3125 -23 3u2b:A
215 3fyl:D 16 16 0.3125 0.3125 0.3125 -23 3g9m:D, 3g9o:C, 3g9p:C
216 3g6q:C 16 16 0.3125 0.3125 0.3125 -23 3g6u:D
217 3g6t:C 16 16 0.3125 0.3125 0.3125 -23
218 3g99:C 16 16 0.3125 0.3125 0.3125 -23 3g9i:C
219 3gpy:B 16 16 0.3125 0.3125 0.3125 -23
220 3jtg:B 16 16 0.3125 0.3125 0.3125 -23
221 3lwl:B 12 12 0.5000 0.6667 0.6667 -23 3lwm:B, 3po4:B, 3po5:B, 1qsy:B
222 3n7q:B 12 12 0.5000 0.6667 0.6667 -23
223 3oqn:E 16 16 0.3125 0.3125 0.3125 -23
224 3oqo:E 16 16 0.3125 0.3125 0.3125 -23 1rzr:R, 1rzr:B
225 3pw7:B 16 16 0.3125 0.3125 0.3125 -23 3pw7:F
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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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