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BioLiP
>dna
cttgacaaaagtgttaaattgtgctatactgggagctgtcacggatgc

The query sequence (length=48) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4xln:O 48 48 1.0000 1.0000 1.0000 4.94e-21 4xln:R, 4xlr:O, 4xlr:R
2 5vi5:O 49 48 0.9792 0.9592 0.9792 2.30e-19
3 4xlp:O 30 30 0.6250 1.0000 1.0000 5.01e-11 4xlp:R, 4xlq:O, 4xlq:R, 4xls:O, 4xls:R
4 6cce:O 57 30 0.6250 0.5263 1.0000 5.01e-11
5 6bzo:O 31 30 0.6250 0.9677 1.0000 5.01e-11 6c04:O, 6ccv:O, 6dcf:O, 6m7j:O, 5tw1:O, 5vi8:O, 6vvs:O, 6vvt:O, 6vvv:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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