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BioLiP
>dna
cgggtttttgttaagggctgtatcactgtgtaagacaggccagatc

The query sequence (length=46) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6oem:I 46 46 1.0000 1.0000 1.0000 6.00e-20 6oen:I, 6oeo:I, 6oep:I, 6oeq:I, 6oer:I
2 6cg0:F 46 46 1.0000 1.0000 1.0000 6.00e-20 6cij:F, 6oem:F, 6oen:F, 6oeo:F, 6oep:F, 6oeq:F
3 5zdz:F 45 45 0.9783 1.0000 1.0000 2.16e-19 5ze0:F, 5ze1:F
4 6oer:F 46 46 0.9783 0.9783 0.9783 2.79e-18
5 6cil:I 37 37 0.8043 1.0000 1.0000 6.04e-15
6 6cil:F 37 37 0.8043 1.0000 1.0000 6.04e-15
7 6cik:I 35 35 0.7609 1.0000 1.0000 7.81e-14
8 6cik:F 35 35 0.7609 1.0000 1.0000 7.81e-14 6cim:F
9 6oet:F 50 46 0.8913 0.8200 0.8913 1.31e-11
10 5ze2:F 30 30 0.6522 1.0000 1.0000 4.70e-11
11 6v0v:I 30 30 0.6522 1.0000 1.0000 4.70e-11
12 6v0v:F 30 30 0.6522 1.0000 1.0000 4.70e-11
13 6cg0:L 30 30 0.6522 1.0000 1.0000 4.70e-11 6cij:L, 6oet:L, 5zdz:L, 5ze0:L, 5ze1:L, 5ze2:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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