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BioLiP
>dna
cgggtttttgttaagggctgtatcactgtg

The query sequence (length=30) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ze2:F 30 30 1.0000 1.0000 1.0000 2.57e-11
2 5zdz:F 45 30 1.0000 0.6667 1.0000 2.57e-11 5ze0:F, 5ze1:F
3 6oet:F 50 30 1.0000 0.6000 1.0000 2.57e-11
4 6oem:I 46 30 1.0000 0.6522 1.0000 2.57e-11 6oen:I, 6oeo:I, 6oep:I, 6oeq:I, 6oer:I
5 6cg0:L 30 30 1.0000 1.0000 1.0000 2.57e-11 6cij:L, 6oet:L, 5zdz:L, 5ze0:L, 5ze1:L, 5ze2:L
6 6cg0:F 46 30 1.0000 0.6522 1.0000 2.57e-11 6cij:F, 6oem:F, 6oen:F, 6oeo:F, 6oep:F, 6oeq:F
7 6oer:F 46 29 0.9667 0.6304 1.0000 9.23e-11
8 6cil:I 37 28 0.9333 0.7568 1.0000 3.32e-10
9 6cil:F 37 28 0.9333 0.7568 1.0000 3.32e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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