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BioLiP
>dna
cgggtttttgtctggcttcacacttgatttgcatcactgtttaagacaggccagatc

The query sequence (length=57) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6oer:G 57 57 1.0000 1.0000 1.0000 6.24e-26
2 6oem:J 57 57 0.9825 0.9825 0.9825 2.90e-24 6oen:J, 6oeo:J, 6oep:J, 6oeq:J, 6oer:J
3 6oem:G 57 57 0.9825 0.9825 0.9825 2.90e-24 6oen:G, 6oeo:G, 6oep:G, 6oeq:G
4 6cg0:G 60 57 0.9825 0.9333 0.9825 2.90e-24 6cij:G
5 5zdz:G 54 54 0.9298 0.9815 0.9815 1.35e-22 5ze0:G, 5ze1:G
6 6cil:J 53 53 0.9123 0.9811 0.9811 4.86e-22
7 6cil:G 53 53 0.9123 0.9811 0.9811 4.86e-22
8 6cim:J 52 52 0.8947 0.9808 0.9808 1.75e-21
9 6cim:G 52 52 0.8947 0.9808 0.9808 1.75e-21
10 6cik:G 51 51 0.8772 0.9804 0.9804 6.28e-21
11 6cg0:M 41 40 0.7018 0.9756 1.0000 1.76e-16 6cij:M
12 5ze2:M 40 39 0.6842 0.9750 1.0000 6.33e-16
13 5ze2:G 40 38 0.6667 0.9500 1.0000 2.28e-15
14 6oet:G 59 38 0.6667 0.6441 1.0000 2.28e-15
15 6cik:M 39 38 0.6667 0.9744 1.0000 2.28e-15 6oet:M, 5zdz:M, 5ze0:M, 5ze1:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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