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BioLiP
>dna
cgcccgcttcggggcaaccctgcgtctaatacaaatccggcaatggagtcaagaccaggttcg

The query sequence (length=63) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6eec:P 63 63 1.0000 1.0000 1.0000 3.29e-29 6vvx:P
2 6vvz:P 62 63 0.9841 1.0000 0.9841 5.51e-27
3 6edt:P 65 65 1.0000 0.9692 0.9692 1.98e-26 6vvy:P, 6vw0:P
4 6edt:O 65 65 1.0000 0.9692 0.9692 1.98e-26 6ee8:O, 6eec:O, 6vvx:O, 6vvy:O, 6vvz:O, 6vw0:O
5 6ee8:P 60 63 0.9524 1.0000 0.9524 4.29e-23

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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