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BioLiP
>dna
cgataacutcgtataatgtatgctatacgaagttatc

The query sequence (length=37) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1nzb:C 37 37 1.0000 1.0000 1.0000 4.74e-15 1nzb:G, 1q3u:C, 1q3u:G
2 7rhz:D 44 36 0.9730 0.8182 1.0000 1.71e-14
3 7rhz:C 44 36 0.9730 0.8182 1.0000 1.71e-14
4 7rhx:D 42 36 0.9730 0.8571 1.0000 1.71e-14 7rhx:F
5 7rhx:C 42 36 0.9730 0.8571 1.0000 1.71e-14 7rhx:E
6 1nzb:D 37 36 0.9730 0.9730 1.0000 1.71e-14 1nzb:H, 1ouq:D, 1ouq:H, 1q3u:D, 1q3u:H, 1q3v:D, 1q3v:H
7 1xo0:D 35 34 0.9189 0.9714 1.0000 2.21e-13
8 3c29:C 35 34 0.9189 0.9714 1.0000 2.21e-13 1xns:C, 1xo0:C
9 3c28:D 34 34 0.9189 1.0000 1.0000 2.21e-13 3c29:D, 3c29:F, 1pvr:D, 1xns:D
10 3c28:C 34 34 0.9189 1.0000 1.0000 2.21e-13 3c29:E
11 2hoi:C 35 34 0.8919 0.9429 0.9706 1.03e-11
12 2hof:C 34 34 0.8919 0.9706 0.9706 1.03e-11 2hoi:E, 1kbu:D
13 8gh8:F 34 34 0.8919 0.9706 0.9706 1.03e-11 8gh8:H, 2hof:D, 2hoi:D, 2hoi:F, 1kbu:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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