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BioLiP
>dna
cctgccaggtaagtatgctctgccccgacacagcctcatacgcctcactctttacacacacgg

The query sequence (length=63) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zx8:T 63 63 1.0000 1.0000 1.0000 3.29e-29
2 7zx8:N 63 63 0.9683 0.9683 0.9683 2.56e-25
3 7zxe:T 46 46 0.7302 1.0000 1.0000 9.29e-20
4 7zxe:N 47 46 0.7302 0.9787 1.0000 9.29e-20
5 7zx7:T 66 46 0.7302 0.6970 1.0000 9.29e-20
6 7zx7:N 66 46 0.7302 0.6970 1.0000 9.29e-20

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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