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BioLiP
>dna
cagctccctgctggctccgagtgggttctgccgct

The query sequence (length=35) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8w8e:T 45 35 1.0000 0.7778 1.0000 5.60e-14 8w8f:T
2 8p4b:T 35 35 1.0000 1.0000 1.0000 5.60e-14
3 8of0:T 37 35 1.0000 0.9459 1.0000 5.60e-14
4 8oeu:T 38 35 1.0000 0.9211 1.0000 5.60e-14 8oev:T, 8oew:T
5 6gmh:T 48 35 1.0000 0.7292 1.0000 5.60e-14 6ted:T
6 7b0y:T 37 35 1.0000 0.9459 1.0000 5.60e-14
7 8a40:T 41 35 1.0000 0.8537 1.0000 5.60e-14
8 8a3y:T 138 35 1.0000 0.2536 1.0000 5.60e-14
9 7ycx:d 45 35 0.9714 0.7556 0.9714 2.61e-12

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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