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BioLiP
>dna
cactggaagatctgaatttacgggcgcaactatgccgg

The query sequence (length=38) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8uis:T 38 38 1.0000 1.0000 1.0000 1.38e-15
2 8uhd:T 38 32 0.8421 0.8421 1.0000 2.98e-12 8uhg:T, 8ui0:T
3 8uha:T 38 31 0.8158 0.8158 1.0000 1.07e-11
4 8eg8:B 30 28 0.7368 0.9333 1.0000 4.98e-10
5 8eg7:B 31 28 0.7368 0.9032 1.0000 4.98e-10 8egb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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